BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2213.p (717 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311911|ref|YP_003776003.1| TonB-dependent siderophore rece... 428 e-121 gi|300309379|ref|YP_003773471.1| TonB-dependent ferric sideropho... 396 e-111 gi|300309869|ref|YP_003773961.1| TonB-dependent ferric sideropho... 375 e-105 gi|300310319|ref|YP_003774411.1| TonB-dependent siderophore rece... 146 5e-36 gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore rece... 66 8e-12 >gi|300311911|ref|YP_003776003.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 733 Score = 428 bits (1100), Expect = e-121, Method: Compositional matrix adjust. Identities = 279/703 (39%), Positives = 383/703 (54%), Gaps = 39/703 (5%) Query: 41 LPWVVVTGDKVPTPDALPAPFSGGQVATGGRLGFLGNRDVLDTPFNTVSYTAQLIEDQQA 100 LP V V + D LPA F+GGQVA G RLG LGN D LD+P +V+YT QLI DQQA Sbjct: 40 LPTVTVNASADASADGLPAEFAGGQVARGSRLGVLGNVDNLDSPVRSVAYTQQLIADQQA 99 Query: 101 KSVSDVLANNPSVRIYYPDNDGSTDFFVRGNKVSQLDIAYDGLYGIGTP----GIESLER 156 V DVL N+P VR + + +RG + D+ Y+GL+GI P E +ER Sbjct: 100 HGVGDVLKNDPVVRTTRGFGNFQESYMIRGFIANSDDLMYNGLFGI-LPRQYVASEMMER 158 Query: 157 IDVLIGANALLNGLGP-SGGVGAMINQVPKKALETPLTRLTFGWISDSQFGGAIDFSRRL 215 ++V GA+A LNG P G+G IN VPK+A PLT LT G+ S + A+D SRR Sbjct: 159 VEVQYGASAFLNGATPGDAGLGGTINIVPKRAANEPLTDLTLGYESGNSQYAALDVSRRF 218 Query: 216 GEDGQFGIRINAAYRDGDTAVNNQSRTVGTATVAMDWRGRGVRVSTNVGYRKND--NQSP 273 G + G+RINAA G T V N+ R ++ +D+RG R+S ++G ++N+ N P Sbjct: 219 GPQERLGVRINAARHAGGTGVANERRETNLFSLGVDYRGNDFRLSADLGLQENNLSNVRP 278 Query: 274 SRTTYM-LTSTFQIPSPPSDPKQNWQNSWTYDNTETKFATARAEVDITPDVTAYAAIGGS 332 S T LTS +P PS N+ W+Y N F T R E D++ TA+AA G Sbjct: 279 SVTIGAGLTS---LPVAPSG-SANYGQPWSYSNARDLFGTVRGEWDLSSSTTAWAAFGAR 334 Query: 333 QFKEEQLFANTFLT-SSTGALLRRTVYWPLYRNTWTAETGLRGTTNTGPVKHKWSLTAST 391 Q E + +T +STGA + T E G+R TG V HK AS Sbjct: 335 QGTENNSLSGVRVTNASTGAAATYRFDNARQDDVATGEVGVRTHLQTGAVSHKLVAAASA 394 Query: 392 LSVT--NGIALNDLGITASNIYTPVYFGQPSIAGLRDSNSVHKTG-ATDLSGIALSDTLS 448 S+ N L+ A+N+Y P + QP++ L +S + +T T+L +SDTL Sbjct: 395 YSLNSRNAYGLSPSYALATNLYNPTNYAQPALTSLGNSLADPQTTIKTNLLSAVVSDTLG 454 Query: 449 ILNDKLQWTIGVREQNVATKTYTEATGAMTGRYDKSKLTYATGLTVRPINNLSLYANYIE 508 +D++ T+GVR+Q + + TY T A T YD+S + G+ + LS+Y NYIE Sbjct: 455 FYDDRVLVTVGVRQQQLKSDTYAYNTQANTAHYDQSATSPMAGVVFKLTKTLSVYGNYIE 514 Query: 509 GLQAGVEV-PSGYTNAGQVFAPYVSKQYEIGAKYDFGG------FLTTLN--AYQLTTPN 559 GLQ G ++ + N GQV APY SKQ E+G KY+ GG F TT +Y+ N Sbjct: 515 GLQQGKQITDTTAANYGQVLAPYKSKQKEVGVKYELGGLGLGAAFFTTDRPLSYKDAVTN 574 Query: 560 AQANGTLYTVDGEQRTKGVELNTYGSLTRDVRLLGGVAFTDARQTNTVNGTNNGKKVQAA 619 +A +G+QR +GVEL YG +T+ VRLL G+ F DA+Q T + NNGK Sbjct: 575 IEA------TNGKQRNRGVELTAYGEVTKGVRLLSGLTFLDAKQVQTNSSANNGKYAIGV 628 Query: 620 ADVQANLGLEWDF--APGFTVSGRTIYTGREYIDTANLQSIPSSVRYDAGLRYMTTLAGH 677 VQAN GLE D G T++GR YT +Y+D AN +PS VRYD G RY+T + GH Sbjct: 629 PRVQANAGLEVDVPGVRGLTLNGRATYTSTQYVDAANQLEVPSWVRYDLGARYLTDIGGH 688 Query: 678 PTAFRFNVENLTNKSYW--LGG---NGFVMQSRPRTFTLSASV 715 R +++N+ N++YW GG +G+++ PRTF+ S SV Sbjct: 689 AVTLRASIDNVANRNYWQSAGGASNSGYLVAGNPRTFSTSVSV 731 >gi|300309379|ref|YP_003773471.1| TonB-dependent ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 790 Score = 396 bits (1018), Expect = e-111, Method: Compositional matrix adjust. Identities = 260/701 (37%), Positives = 370/701 (52%), Gaps = 36/701 (5%) Query: 34 DTTASGNLPWVVVTGDKVPTPDALPAPFSGGQVATGGRLGFLGNRDVLDTPFNTVSYTAQ 93 DT AS LP V + A + ++G +A GG LG LGNR V+D P T++YT + Sbjct: 107 DTLASAPLPAVTIRAA------ADTSAYAGAYLARGGALGVLGNRAVMDIPLATLNYTNE 160 Query: 94 LIEDQQAKSVSDVLANNPSVRIYYPDNDGSTDFFVRGNKVSQLDIAYDGLYGIGT----P 149 L++DQQA++V+D + N+ S+R+ + +RG ++ D+ +GL+G+ + P Sbjct: 161 LLQDQQARTVADAVLNDASIRMLTSTGGFGETYQIRGYGLTSGDVGVNGLFGLASGNRMP 220 Query: 150 GIESLERIDVLIGANALLNGLGPSGGVGAMINQVPKKALETPLTRLTFGWISDSQFGGAI 209 + +ER+DVL G LL+G+ P G +G IN V K+A + PLTRLT + S Q G + Sbjct: 221 AV-MIERVDVLKGPGTLLHGISPEGSIGGSINLVTKRAEDEPLTRLTALYQSRRQPGVQV 279 Query: 210 DFSRRLGEDGQFGIRINAAYRDGDTAVNNQSRTVGTATVAMDWRGRGVRVSTNVGYRKND 269 D RR G +GIR N R G+ ++ + G +A+D+RGRG R S + YR+ + Sbjct: 280 DLGRRFGTQDAWGIRFNTVLRRGEASIAGGRQDAGAGALALDYRGRGWRWSLDA-YRQRE 338 Query: 270 NQSPSRTTY-MLTSTFQIPSPPS---DPKQNWQNSWTYDNTETKFATARAEVDITPDVTA 325 N S R L +P+PPS D Q S+ D T R EV+++ ++A Sbjct: 339 NSSDFRPQVGFLPGVTALPAPPSGDLDFFSGNQLSFQDDALLT-----RVEVELSEQLSA 393 Query: 326 YAAIGGSQFKEEQLFANTFLTSSTGALLRRTVYWPLYRNTWTAETGLRGTTNTGPVKHKW 385 YAA+G + +Q + +S GA R Y+ T +A+ GLR TG V+H Sbjct: 394 YAAVGQRRSATQQNLPTGSVDAS-GAGSVRNAYYDTASRTLSADAGLRLQAATGAVRHGV 452 Query: 386 SLTASTLSVTNGIA-LNDLGITASNIYTPVYFGQPSIAGLRDSNSVHKTGATDLSGIALS 444 SL + L G A L +A ++Y P P I+ R K L ++L+ Sbjct: 453 SLGVTRLRQQAGNAYLVSADSSAYSLYAPATL--PVISAAR--TEPRKAYDMTLDSLSLT 508 Query: 445 DTLSILNDKLQWTIGVREQNVATKTYTEATGAMTGRYDKSKLTYATGLTVRPINNLSLYA 504 DTL +L D+LQ +G R Q+V ++ +GA Y+ S ++ GL V+P+ LSLYA Sbjct: 509 DTLRLLEDRLQLLVGARRQSVRYDSFDTVSGAQLSSYEASAISPLLGLVVKPVAGLSLYA 568 Query: 505 NYIEGLQAGVEVPSGYTNAGQVFAPYVSKQYEIGAKYDFGGFLTTLNAYQLTTPNA---- 560 N GL G VP+G NAGQV APY S+Q E GAK D+G +T +Q+ P+A Sbjct: 569 NTTSGLTRGTIVPTGLANAGQVLAPYRSRQLEAGAKLDWGRVMTQAAWFQIDNPSAVITT 628 Query: 561 QAN---GTLYTVDGEQRTKGVELNTYGSLTRDVRLLGGVAFTDARQTNTVNGTNNGKKVQ 617 QA+ + Y DG QR +G+EL+ YG L R +RLL F AR T NG N+G+ Sbjct: 629 QASTPASSSYGYDGRQRNRGLELSAYGELMRGLRLLASATFYQARLLRTANGLNDGRTAP 688 Query: 618 AAADVQANLGLEWDFA--PGFTVSGRTIYTGREYIDTANLQSIPSSVRYDAGLRYMTTLA 675 ANL L+W+ A PG SGR I+TG Y D AN +PS R+D G+RY + L Sbjct: 689 GVPLRAANLSLDWEPAGLPGLAFSGRMIHTGPVYYDAANTLRLPSWTRWDLGVRYRSRLG 748 Query: 676 GHPTAFRFNVENLTNKSYWLGGNGFVMQSRPRTFTLSASVD 716 P +R NVENL N S WL +V + PRT LS VD Sbjct: 749 ERPVVWRLNVENLFNHSTWLLDKPYVTVAAPRTVLLSMQVD 789 >gi|300309869|ref|YP_003773961.1| TonB-dependent ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 725 Score = 375 bits (962), Expect = e-105, Method: Compositional matrix adjust. Identities = 263/709 (37%), Positives = 383/709 (54%), Gaps = 30/709 (4%) Query: 20 VLCAQHAYAADNSEDTTASGNLPWVVVTGDKVPTPDALPAPFSGGQVATGGRLGFLGNRD 79 +L A A+A D+ AS LP V VTG + LPA ++GGQVA GG LG LG +D Sbjct: 36 LLAAPAAFAQDSGTAQDAS--LPTVTVTGR---SDTGLPAAYAGGQVARGGGLGVLGTQD 90 Query: 80 VLDTPFNTVSYTAQLIEDQQAKSVSDVLANNPSVRIYYPDNDGSTDFFVRGNKVSQLDIA 139 VLDTPF+T++YT + I++ QA++V DV+ + SVR D + +RG VS D Sbjct: 91 VLDTPFSTLNYTVEGIKNLQARTVGDVITSEASVRNTNGDGGFGDSYQIRGLPVSVNDTG 150 Query: 140 YDGLYGIGTPGIES---LERIDVLIGANALLNGLGPSGGVGAMINQVPKKALETPLTRLT 196 ++GLYG+ + S LER++VL G L+ G+GP+GGVG IN V K+A E P++ LT Sbjct: 151 FNGLYGLVSLSRMSTAMLERVEVLKGPGTLMYGMGPAGGVGGAINLVSKRAGEEPVSSLT 210 Query: 197 FGWISDSQFGGAIDFSRRLGEDGQFGIRINAAYRDGDTAVNNQSRTVGTATVAMDWRGRG 256 ++ +Q G D RR G+D ++GIR+NA Y DG T+V + + ++A+D+ GR Sbjct: 211 ATYVGSAQLGLQGDIGRRFGQDKEWGIRVNALYADGRTSVADNRQQQSMGSLALDYTGRK 270 Query: 257 VRVSTNVGYRKNDNQSPSRTTYMLTSTFQIPSPPSDPKQNWQNSWTYDNTETKFATARAE 316 +R + + Y ++++ R + + +T +P D N+ D+ K R E Sbjct: 271 LRWTLDA-YTQHEDTRNFRPQFSIGTTSMPSAPAGDSNLYPGNTLQIDD---KVVATRLE 326 Query: 317 VDITPDVTAYAAIGGSQFKEEQLFANTFLTSSTGALLRRTVYWPLYRNTWTAETGLRGTT 376 D+T +TAY AIG + Q F + +T GA R Y+ + +A+ GLR Sbjct: 327 YDLTEQLTAYGAIGYHEGATAQSFPSATITGLDGATSVRNGYYDQKVVSTSADVGLRARF 386 Query: 377 NTGPVKHKWSLTASTLSVTNG--IALNDLGITASNIYTPVYFGQPSIAGLRDSNSVHKTG 434 TGPV+H S+ A+TL +N G+ ASN+Y P + A Sbjct: 387 ATGPVQHTLSMAANTLDQQTSYFYFVNATGV-ASNLYQPAPLAPVTAA----RGEPLPQS 441 Query: 435 ATDLSGIALSDTLSILNDKLQWTIGVREQNVATKTYTEATGAMTGRYDKSKLTYATGLTV 494 T LSG+AL+DTLSI + +L T G+R Q V + +++ + + +K + G+ V Sbjct: 442 QTRLSGLALTDTLSIADGRLLLTGGLRRQQVYSNSFSTRSSS-----NKIGYSPVLGVVV 496 Query: 495 RPINNLSLYANYIEGLQAGVEVPSGYTNAGQVFAPYVSKQYEIGAKYDFGGFLTTLNAYQ 554 +P+ NLSLYANY GL AG + Y NAGQ FAPY +KQYE G K D+G TT +Q Sbjct: 497 KPLENLSLYANYTAGLSAGGFAGAQYANAGQAFAPYKTKQYESGVKLDWGRVTTTAAVFQ 556 Query: 555 LTTPNAQ----ANGTLYTVDGEQRTKGVELNTYGSLTRDVRLLGGVAFTDARQTNTVNGT 610 + N+ + T T DG R +G+EL+ YG R +RL+ F + RQ++TV GT Sbjct: 557 IERANSSTAVVGSQTFATQDGRARVRGLELSAYGEAQRGLRLMASGTFFETRQSHTVGGT 616 Query: 611 NNGKKVQAAADVQANLGLEWD--FAPGFTVSGRTIYTGREYIDTANLQSIPSSVRYDAGL 668 N+GK++ A NLG +WD + G ++ R I TG + AN +P R D G Sbjct: 617 NDGKEIGAVPKHNFNLGADWDTPWLQGLALNTRIINTGASWYSDANTVKVPGWTRMDLGA 676 Query: 669 RYMTTLAGHPTAFRFNVENLTNKSYWLGGNGFVMQSRPRTFTLSASVDL 717 RY + L G +R N+ENL +K YW+ NG+ RT LSA VD Sbjct: 677 RYTSRLGGQTITYRANLENLFDKHYWIMQNGYAGYGAGRTLVLSAQVDF 725 >gi|300310319|ref|YP_003774411.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 723 Score = 146 bits (369), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 196/752 (26%), Positives = 305/752 (40%), Gaps = 85/752 (11%) Query: 11 MKTCAGVIAVLCAQHAYAADNSEDTTASGNLPWVVVTGDKVPTPDALPAPFSGGQVATGG 70 M T AG L A AAD S++ +LP + VT +G Q + Sbjct: 12 MLTLAGTSLGLPAV-TRAADTSDNQGQDQSLPTINVTASGA----------TGTQARSAS 60 Query: 71 RLGFLGNRDVLDTPFNTVSYTAQLIEDQQAKSVSDVLANNPSVRIYYPDNDGSTDFFVRG 130 GF + +LDTP + T+ ++DQQ++ +SDV+ N+ S+ Y +F +RG Sbjct: 61 VAGF-DDAPLLDTPASVSVVTSAQMKDQQSRLLSDVVKNDASINENYAPVGYYENFSIRG 119 Query: 131 --------NKVSQLDIAYDGLYGIGTPGIESLERIDVLIGANALLNGLGPSGGVGAMINQ 182 +V+ L +A G T +E+ ER++ L G L G+ +GG ++N Sbjct: 120 FTLDPASAYRVNGLTVA-----GEQTIALENKERVEFLKGVAGLQAGVVAAGG---LVNY 171 Query: 183 VPKKALETPLTRLTFGWISDSQFGGAIDFSRRLGEDGQFGIRINAAYRDGDTAVNNQSRT 242 V K+ + +T G S+ A D GE QFG+RINAA+ D + V+N Sbjct: 172 VTKRPAN--VRSITLGTDSNGSRYLATDLGALFGEHKQFGLRINAAHEDIHSYVSNGDGW 229 Query: 243 VGTATVAMDWRGRGVRVSTNVGYRKNDNQSPSRTT--YMLTSTFQIPSPPSDPKQNWQNS 300 A+++ W + T V + Q R+ Y L +PS S Sbjct: 230 RDFASLSATW---AISARTLVQFDAEYQQKAQRSVAGYQLLGGATLPSGVSPSTMLTPQP 286 Query: 301 WTYDNTETKF-ATARAEVDITPDVTAYAAIGGSQFKEEQLFA----------NTFLTSST 349 W+ ++ A R + + D Y G S+ + A TF + Sbjct: 287 WSQPVRDSSVNARLRIDTEFNADWRGYVQAGRSRAVIDDYLAFPYGSGNGASPTFAANGD 346 Query: 350 GALLRRTVYWPLYRNTWTAETGLRGTTNTGPVKHKWSLTASTLSVTNGIALNDLGITA-- 407 + V RN + G +G V+H+ +L ++++ I GI+ Sbjct: 347 FDVYDYRVPNDERRNDEVQAVAI-GKFASGWVQHELTLG---MAMSRRIVDKSDGISVLV 402 Query: 408 --SNIY--TPVYFGQPSI--AGLRDSNSVHKTGATDLSGIALSDTLSILNDKLQWTIGVR 461 NIY TPV ++ A R+ +S K + SD + + + Q G R Sbjct: 403 GQGNIYNGTPVLPAANAVIPAAYRNLDSRQK-------ALFFSDRMQ-FSQRWQVLAGGR 454 Query: 462 EQNVATKTYTEATGAMTGRYDKSKLTYATGLTVRPINNLSLYANYIEGLQAGVEVPSGYT 521 + + +++ +TGA+T ++ L +P+ NLSLY +Y E L G P + Sbjct: 455 QVWLNEQSF-NSTGAVTRDTSRNLFLPQLALIFKPVQNLSLYGSYAETLSLGSSAPFWVS 513 Query: 522 NAGQVFAPYVSKQYEIGAKYDF-------GGFLTTLNAYQLTTPNAQANGTLYTVDGEQR 574 N P V++Q E G KY+F T AY+ P+ G Y G+Q Sbjct: 514 NFPVTLPPSVARQLEAGVKYEFSPELALTAAVFRTRKAYEYQKPDNSPTGFTYVQQGQQT 573 Query: 575 TKGVELNTYGSLTRDVRLLGGVAFTDARQTNTVNGTNNGKKVQAAADVQANLGLEWDFA- 633 GVEL G LT RL G A T R + GT Q + + D+A Sbjct: 574 NTGVELGANGKLT--PRLAIGAAATVLRARASDTGTARFDDQQVVNVPRLRTAVYADYAV 631 Query: 634 ---PGFTVSGRTIYTGREYIDTANLQSIPSSVRYDAGLRYMTTLAGHPTAFRFNVENLTN 690 G V G Y+ + ++P+ ++AGLRY + GH R N++NL + Sbjct: 632 PGMEGVNVMGSWNYSASKPATRDGSVNLPAVHVFNAGLRYQLRVNGHAATLRANIDNLFD 691 Query: 691 KSYWLG-----GNGFVMQSRPRTFTLSASVDL 717 K YW G+G+V PRT LS D Sbjct: 692 KRYWKDAGQYLGDGYVHLGAPRTARLSLQYDF 723 >gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 738 Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 91/215 (42%), Gaps = 13/215 (6%) Query: 486 LTYATGLTVRPINNLSLYANYIEGLQAGVEVPSGYTNAGQVFAPYVSKQYEIGAKYDFG- 544 L+ +G +P + + Y +Y +E +G T Q P ++ YE+G K+D Sbjct: 504 LSLRSGAIWQPTSAQAYYVSYGTSFNPSLEQLTG-TQGQQNLDPEKNRSYELGGKWDLAD 562 Query: 545 GFLTTLNAYQLTTPNA--QANGTLYTVDGEQRTKGVELNTYGSLTRDVRLLGGVAFTDAR 602 G T A+Q+T NA Q +Y + G+ R G G +TR+ ++ + A+ Sbjct: 563 GLALTAAAFQITKDNARSQVATGVYALAGKVRVNGARAGATGHITREWQVAANYTYLGAK 622 Query: 603 QTNTVNGTNNGKKVQAAADVQANLGLEW---DFAPGFTVSGRTIYTGREYIDTANLQSIP 659 G N+ KV + + W D AP + + G Y + Y D N + Sbjct: 623 VLEGAAGDNSVGKV--PVNTPKHTLTTWTTYDLAPHWQIGGGASYMSQRYADAPNTVQVG 680 Query: 660 SSVRYDAGLRYMTTLAGHPTAFRFNVENLTNKSYW 694 RYDA L Y T R N+ NL+NK Y+ Sbjct: 681 GYTRYDAMLAYTT----KAYDIRLNLYNLSNKMYY 711 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.132 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,221,305 Number of extensions: 93909 Number of successful extensions: 318 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 293 Number of HSP's successfully gapped: 16 Length of query: 717 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 625 Effective length of database: 1,184,250 Effective search space: 740156250 Effective search space used: 740156250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 134 (56.2 bits)