BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2211.p
         (192 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311658|ref|YP_003775750.1| non-ribosomal peptide synthetas...    65   3e-12

>gi|300311658|ref|YP_003775750.1| non-ribosomal peptide synthetase
            [Herbaspirillum seropedicae SmR1]
          Length = 9160

 Score = 65.5 bits (158), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 86/201 (42%), Gaps = 20/201 (9%)

Query: 1    MQPQGPYHLLGWSLGGLLALEIASQLESRGQSVAWVGAVDAKSPQQRALDR---LGKNRE 57
            +QPQGPYHLLGWSLG  LA ++A +LE++G  VA++G VD   PQ  A D    L   ++
Sbjct: 8941 VQPQGPYHLLGWSLGATLAAQVAQRLEAQGTQVAFLGLVDGYVPQSEAADARDWLDDLQD 9000

Query: 58   LVRRTQPS----AQEMERFWTSQA--ERDDGAAQFLADVQPQSRVAAQDQQRLAENLARA 111
             V    P+    A   +R+   QA   R  GA    A          +    L  +L  A
Sbjct: 9001 FVSVMLPASWDGAAGSKRWLALQALQARQSGALPSEAAALAMLSAMLEQAGELPASLPSA 9060

Query: 112  PNYVMALTSAGLERRIRADL----------HVWWSAQTPPQQRQGWEDSSTGTMSVNHIA 161
                     A   R+I A            H WW A+  P  R   +     T     + 
Sbjct: 9061 GELARIFVVARHLRQISAQAPALEAVAASPHYWWIARRKPAHRAELKRQLGQTGCAEVLL 9120

Query: 162  QVSHREIVKSPQLVD-AIQAL 181
            +  H  I+K  +L+D  +QAL
Sbjct: 9121 ETDHFSIMKQARLLDEVVQAL 9141


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.127    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 572,095
Number of extensions: 21473
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,241,070
Effective search space: 138999840
Effective search space used: 138999840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)