BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2210.p
         (196 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312216|ref|YP_003776308.1| IS1404 transposase [Herbaspiril...    83   1e-17

>gi|300312216|ref|YP_003776308.1| IS1404 transposase [Herbaspirillum
           seropedicae SmR1]
          Length = 367

 Score = 83.2 bits (204), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 70/144 (48%), Gaps = 6/144 (4%)

Query: 54  IDQATRRCLALHVARQI---RSNDVIDIQAEAMVTYGVPAYLRSDNGPEMVAKNLRRWLA 110
           +D  T+  +A+ V   I   R   V+D  A+      +P  +R D+GPE  +  L  W A
Sbjct: 227 VDDFTKESVAIEVDTSISGLRLGRVLDKVAQER---PLPTMIRVDHGPEFTSLALDAWAA 283

Query: 111 SVGSKTLYIEPGSPWENGYCESFNGKFGDELLNGEIFYTLREAQVIIERWRHQYNTVRPH 170
             G K  + +PG P +N Y ESFNG+F DE LN  +F TL EA+  IE WR Q    R  
Sbjct: 284 GRGVKLAFTQPGKPTQNAYIESFNGRFRDECLNDHLFSTLHEARYRIEAWRAQRTQRRTA 343

Query: 171 SSLKYRPPAPQATLPASTPAPLRL 194
              +   P   A   A +  P RL
Sbjct: 344 QLQRQESPPKTAYQTAKSYIPPRL 367


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 620,394
Number of extensions: 24046
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 116
Effective length of database: 1,241,070
Effective search space: 143964120
Effective search space used: 143964120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)