BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2206.p (2314 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein... 104 8e-23 gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein... 82 4e-16 gi|300311658|ref|YP_003775750.1| non-ribosomal peptide synthetas... 63 3e-10 gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein... 62 6e-10 >gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 413 Score = 104 bits (260), Expect = 8e-23, Method: Composition-based stats. Identities = 77/244 (31%), Positives = 120/244 (49%), Gaps = 17/244 (6%) Query: 167 DYLATRVSYKLNLTGPSLTVQTACSSSLVAVHMACEQLVSGECDMALAGGVGLS------ 220 + ++ +S K L GP+L + TAC++ L + A ++ G+ D+ +AGG S Sbjct: 144 NMISGNLSIKFGLKGPNLAIVTACTTGLHCIGSAARMIMYGDADVMVAGGAESSVSPLGI 203 Query: 221 --FPQESGYLHRDGMIFSAQGQCRPFDAQADGVTIGNGAGVVLLKPLQRALADGDPILAV 278 F R+ +A RP+D DG +G GAGV++L+ + A A G I A Sbjct: 204 GGFASARALSTRNDDPATAS---RPWDKDRDGFVLGEGAGVMVLEEYEHAKARGAKIYAE 260 Query: 279 IRGSAINNDGQRKAGFTAPSVEGQQAVITEALSLAAVSPADIGLVEAHGTGTPLGDPIEV 338 + G ++ D TAP+++G + + AL A V+P ++ + AHGT TPLGD E Sbjct: 261 LLGFGMSGDAYH---MTAPNLDGPRRCVLNALRDAGVNPDEVQYLNAHGTSTPLGDKNES 317 Query: 339 RALTQAWRPHTSAAQYCALGSVKSNLGHLDTAAGIASLLKAALAVHHAHIPPSLGVETPN 398 A+ A+ H A + S KS GHL AG + LAVH+ PP++ + + Sbjct: 318 DAIKAAFGDH---AYKMVVNSTKSMTGHLLGGAGGLETVLTVLAVHNQVSPPTMNIFNQD 374 Query: 399 PAID 402 P D Sbjct: 375 PECD 378 >gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 414 Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 119/276 (43%), Gaps = 24/276 (8%) Query: 177 LNLTGPSLTVQTACSSSLVAVHMACEQLVSGECDMALAGGVGLSFPQESGYLHRDGMIFS 236 +TG +T +AC+S + A E + SG +AGG E+ D + + Sbjct: 157 FGITGRIITTSSACTSGSQGIGYAYETIRSGRQLAMVAGGAEELCATEAAVF--DTLYAT 214 Query: 237 A------QGQCRPFDAQADGVTIGNGAGVVLLKPLQRALADGDPILAVIRGSAINNDGQR 290 + Q PFD DG+ +G GAG ++L+ L+ A A G I A I G N+DG Sbjct: 215 SVRNDTPQVTPSPFDRDRDGLVLGEGAGSLILEDLEHAQARGAHIHAEIVGFGTNSDG-- 272 Query: 291 KAGFTAPSVEGQQAVITEALSLAAVSPADIGLVEAHGTGTPLGDPIEVRALTQAWRPHTS 350 A T P+ QA I AL A + + IG + AHGTGT GD E +A + + T Sbjct: 273 -AHVTNPNAATMQAAIQMALDDAGLPASAIGYINAHGTGTRQGDVAETQATARVFGKATP 331 Query: 351 AAQYCALGSVKSNLGHLDTAAGIASLLKAALAVHHAHIPPSLGVETPNPAIDWQDSPFYV 410 + S+KS +GH A G + + H P++ ++ P+P D Sbjct: 332 ------ISSLKSYMGHTLGACGALEAWLSIEMMRHGWFAPTINLQHPDPDCGELD----- 380 Query: 411 PPVLLPWPDSQTPRRAGVSSFAIGGTNCHVVLEEAP 446 L + ++FA GG N ++ + P Sbjct: 381 --YLTGNGRALECEYVMSNNFAFGGINTSLIFKRWP 414 >gi|300311658|ref|YP_003775750.1| non-ribosomal peptide synthetase [Herbaspirillum seropedicae SmR1] Length = 9160 Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/254 (26%), Positives = 106/254 (41%), Gaps = 14/254 (5%) Query: 1891 FEQAWNRLLQRHPILRCGIASDGQLRPVAEVHQ---RITHHHLTAQQGDSLAVARQQLRQ 1947 EQA L+ RH ILR G D PVA +H + H L A + +LR+ Sbjct: 3299 LEQALRLLVARHDILRTGFGEDADGNPVATLHPFDFSLEQHDLAALPPPQRDLQLDRLRR 3358 Query: 1948 RLSSYRFAPGEWPLFQWHASHLPGERLCLHLLVHTLLVDIESFRIMLREL----HLLIND 2003 ++ RFA + PL + L ++ L L +H ++ D S +M+ E+ L Sbjct: 3359 SHAAARFALRQPPLLRAALVRLASQQQVLLLAIHHIVADGWSVALMMEEIAAAYSALQEG 3418 Query: 2004 PDYGLPSLAFDGLDYLHAETALSQTPLAQSHLQQYRNIVAGYPTPPELPVHASQRAGAAL 2063 Y P L DY + A + + + + + +R+ +AG P P LP + A A Sbjct: 3419 RSYAPPPLPLQYADYAAWQVAGAGSRMLEDSIAWWRDALAGVPATPYLPSTRPRPARATY 3478 Query: 2064 LTWRRTLARPDWLQLKQQ--GEQAGVSGTVVLLAALAMALQPWTQQSAFSLRLD-----Y 2116 R + P L+ Q + GV+ VLLA+ A L + F + D + Sbjct: 3479 AGQRLRMHLPAHLRSGVQALARREGVTAYAVLLASFAWLLHQRSGAGDFVVGTDVAGRSH 3538 Query: 2117 PDRLPLHAHIMNVM 2130 PD L +NV+ Sbjct: 3539 PDLERLVGFFVNVL 3552 >gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 399 Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 88/319 (27%), Positives = 126/319 (39%), Gaps = 61/319 (19%) Query: 141 YPAGRFEQVQEVSSPLTFQRLIGNDKDYLATRVSYKLNLTGPSLTVQTACSSSLVAVHMA 200 +P G QE+ SP AT + L TGP+ +AC+SS A+ A Sbjct: 125 FPPGYHYGQQELGSP--------------ATALQLTLGTTGPAYVQSSACASSGKAIASA 170 Query: 201 CEQLVSGECDMALAGGVG-LSFPQESGYLHRDGMIFSAQGQCRPFDAQADGVTIGNGAGV 259 L G CD L GGV L +G+ + + SAQ +C P G+ IG GA + Sbjct: 171 ARLLNMGLCDAVLCGGVDTLCQFTIAGFTALESV--SAQ-RCNPLSLHRQGINIGEGAAL 227 Query: 260 VLLKPLQRALADGDPILAVIRGSAINNDGQRKAGFTAPSVEGQ--QAVITEALSLAAVSP 317 LL +P + G ++D +AP EG+ Q I +AL A ++ Sbjct: 228 FLLTR--------EPAAVQLSGWGESSDAYH---ISAPDPEGRGAQLAIGQALRRAGLTA 276 Query: 318 ADIGLVEAHGTGTPLGDPIEVRALTQAWRPHTSAAQYCALGSVKSNLGHLDTAAGIASLL 377 + I + HGT TP D +E + + + + S K GH G AS + Sbjct: 277 SQIDYINLHGTATPQNDAMESKVVQALF------GLEVPVSSTKPFTGH---TLGAASAI 327 Query: 378 KAALA-------VHHAHIPPSLGVETPNPAIDWQDSPFYVPPVLLPWPDSQ---TPRRAG 427 +A L +PP L +PA+ P L P Q P R Sbjct: 328 EAGLCWLLMQDDNPDGLLPPHLWDGVADPAL----------PALAPVQVGQRLGRPLRHV 377 Query: 428 VS-SFAIGGTNCHVVLEEA 445 +S SFA GG+N +V Sbjct: 378 LSNSFAFGGSNVALVFSRG 396 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 6,917,647 Number of extensions: 282499 Number of successful extensions: 1111 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 1101 Number of HSP's successfully gapped: 4 Length of query: 2314 Length of database: 1,619,870 Length adjustment: 101 Effective length of query: 2213 Effective length of database: 1,141,635 Effective search space: 2526438255 Effective search space used: 2526438255 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 139 (58.2 bits)