BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2204.p
         (564 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311655|ref|YP_003775747.1| thioesterase involved in non-ri...    92   8e-20
gi|300310751|ref|YP_003774843.1| SAM-dependent methyltransferase...    60   5e-10

>gi|300311655|ref|YP_003775747.1| thioesterase involved in
           non-ribosomal peptide biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 249

 Score = 92.4 bits (228), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 101/218 (46%), Gaps = 8/218 (3%)

Query: 332 LFALPYAGGGASIYRDWTSA-SAHWSLHPLQLPGHENRLAEAAHVDMDKLVQQL----AA 386
           LF LP AGG AS Y  W     AH  + PL+LPG  +R+AE A  D D L  QL    AA
Sbjct: 7   LFCLPCAGGSASSYLRWRRLLPAHIQVLPLELPGRGSRMAETALRDFDTLSMQLTGRVAA 66

Query: 387 VLQPYAQQPWALLGCSLGGKIAFELARHFSAQGT--PPQHLIVLACPAPSVPVRQALSHL 444
            L  + Q  +AL G S+G  +A+ +AR  + Q     P  L++ A  APS       +  
Sbjct: 67  DLASWPQARYALFGHSMGALLAYGMARRLALQPALRQPDALLLSASAAPSRRDTHRFAAS 126

Query: 445 PPAQFAHAVAQLGGTPTDILQHTDMMQTVMPALRSDSQLAEHYCCASDCSIDAPITLFYA 504
             A   H + +LGGT  ++ +  +++   +  L +D  +   +       +  P+ ++  
Sbjct: 127 DTASLLHDLRRLGGTDPEVFEDRELLSMTLDVLAADYAVCASFIRHPGPPLTMPLQVYAG 186

Query: 505 EDDHLVTPEQALQWRNHTRGRFSAQAVAGGHFFLRQQR 542
             D  +       WR  TR  F  Q   GGHF+L  Q+
Sbjct: 187 RSDE-IDAVCLNAWREETRAAFDLQWFDGGHFYLHAQQ 223


>gi|300310751|ref|YP_003774843.1| SAM-dependent methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 77  IMDIGCGRGGALALLQRFYAPTQLIGIDISPSNIAYCRQQH--QGRRLRFQLGDACRLPH 134
           + D+GCG G +L  L + +AP +LIG+DI P+ IA  R +   +G R  F    + R+  
Sbjct: 57  VADVGCGWGRSLKKLHQRFAPQRLIGMDIDPAMIAAARSETEAEGLRAEFIQCSSSRMRL 116

Query: 135 PDNSVDVVLNMESSGAYSDLPAFFEQVQRILAPQGYFCFSD 175
            DNSVD++   ++     D      +  R+L P G   F++
Sbjct: 117 EDNSVDLLFCHQTFHHLIDQEEAIREFYRVLKPGGILLFAE 157


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,923,798
Number of extensions: 86307
Number of successful extensions: 301
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 2
Length of query: 564
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 474
Effective length of database: 1,193,720
Effective search space: 565823280
Effective search space used: 565823280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)