BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2203.p
         (254 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311655|ref|YP_003775747.1| thioesterase involved in non-ri...   100   2e-22

>gi|300311655|ref|YP_003775747.1| thioesterase involved in
           non-ribosomal peptide biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 249

 Score = 99.8 bits (247), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 104/215 (48%), Gaps = 11/215 (5%)

Query: 23  LFCLHHAGSNAASFRSWQAYFAGYGIHIAPLELPGHGTRRSQS----LHTSHLTLIEDMS 78
           LFCL  AG +A+S+  W+     + I + PLELPG G+R +++      T  + L   ++
Sbjct: 7   LFCLPCAGGSASSYLRWRRLLPAH-IQVLPLELPGRGSRMAETALRDFDTLSMQLTGRVA 65

Query: 79  HALLGLLPERYAIYGHSLGALLGFELAS--ALQAQGRPPQALFVSGRRPPQLPTPMPWRH 136
             L      RYA++GHS+GALL + +A   ALQ   R P AL +S    P        R 
Sbjct: 66  ADLASWPQARYALFGHSMGALLAYGMARRLALQPALRQPDALLLSASAAPSRRDTH--RF 123

Query: 137 QMGD-AELVEQLLALGGNGTTLLAHPELQALFLPVIRADFAITECYQYQPRPALQCPLHS 195
              D A L+  L  LGG    +    EL ++ L V+ AD+A+   +   P P L  PL  
Sbjct: 124 AASDTASLLHDLRRLGGTDPEVFEDRELLSMTLDVLAADYAVCASFIRHPGPPLTMPLQV 183

Query: 196 FVGERDPEVSAAQMALWQMHTAADFSQQVIAGAHF 230
           + G  D E+ A  +  W+  T A F  Q   G HF
Sbjct: 184 YAGRSD-EIDAVCLNAWREETRAAFDLQWFDGGHF 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 872,491
Number of extensions: 36667
Number of successful extensions: 139
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,226,865
Effective search space: 209793915
Effective search space used: 209793915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)