BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2202.p (683 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311951|ref|YP_003776043.1| siderophore (yersiniabactin/pes... 429 e-121 gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore rece... 80 4e-16 gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore... 60 5e-10 gi|300310281|ref|YP_003774373.1| TonB-dependent siderophore rece... 57 4e-09 >gi|300311951|ref|YP_003776043.1| siderophore (yersiniabactin/pesticin) receptor FyuA protein [Herbaspirillum seropedicae SmR1] Length = 703 Score = 429 bits (1102), Expect = e-121, Method: Compositional matrix adjust. Identities = 257/673 (38%), Positives = 378/673 (56%), Gaps = 23/673 (3%) Query: 27 SASQGAALPEVTVQASKQGKTEQKINGSISVVSGATLEQANVSRTDDLQRALPDLYLPQQ 86 +A + L V V A+K+ +T + +NGS+ V+ L+ A V T DL R LP + + Sbjct: 34 AADERTRLAPVIVTANKREQTLESVNGSVVVLEQPQLDDAQVRNTQDLGRVLPGVQMAGS 93 Query: 87 GNSAFITPSLRGVASL-NTYNPAVVMYVDGVPQFVTAQSQLLTNVEQVELLRGPQGSLFG 145 G+ + S+RGV S + YNPA+ +YVDGVPQ +Q L +VE+VELL+GPQG+L+G Sbjct: 94 GSMHYPLISVRGVTSAQDFYNPALTLYVDGVPQMPILVNQSLLDVERVELLKGPQGTLYG 153 Query: 146 RNAAAGVINIVTRQPDNELAGHVEGGFGNRGRRTTTASISGPLVKDSLYGEAVIAYDSAD 205 ++A GVIN+ TRQPDN + + G+ +R +++ PLVKD LY + +D A Sbjct: 154 KSAEGGVINVTTRQPDNTVRAGLRAGWSSRDGNLLEGTLALPLVKDMLYASVALRHDDAP 213 Query: 206 GFLRSLSSGQDNVGMHEDVAGQVKLRYAPVGGPLDVRFMASHECVRSAEDNYVSYTNFSN 265 G L + ++G D G +G V+LR AP G P A EC RS +D YV++ + + Sbjct: 214 GDLHNPATGADRQGGVRSRSGMVRLRLAPPGAPWQASLAAGRECARSRQDAYVAFNDIDS 273 Query: 266 RVILDGNSVPGLATMNSYMKRCIDNMSLSADYDFSDYRLSLVTARNKVDI-RERLLGAQG 324 R I + +P T S +RC D+ SLSA YD ++LS + + + R L G Sbjct: 274 RKIYVQSGMPKALTDFS-QRRCGDSQSLSAVYDGGPWKLSALAGWQQAETDRSYLFGPYY 332 Query: 325 KSMPESQESLSQEVRLATRGTGRAWDGVVGAYFEHGRYKQRSSYVLFPTFGTDS----SQ 380 + PE QE+RLA++G RAWDG+ G Y + +R L P+FG ++ S Sbjct: 333 TAQPEHWRQDMQEIRLASQGQNRAWDGLFGLYRQATGQSRRYRNDL-PSFGFNALDTQSH 391 Query: 381 TTTDSAAVFVDGTWHVTPRWDVSAGARLVQDKAETSGVLPIEGVAAY-------ASSTSS 433 T+S A + D TWH T D+S G R D+A T+ A + ASSTS Sbjct: 392 NETESVAAYGDLTWHATAALDLSGGLRFTHDRARTAFGGTALNFATFTQQPFGGASSTSD 451 Query: 434 NKALGKLSTGYQLTPSLRSYASLSQGYKPGGYNLQPTSANDSRSYRPETSLNYEMGLKFN 493 + LG+LS G++L P R Y SL+QGYKPGGYNL P+S D+R++ E + +YE+G ++N Sbjct: 452 DSVLGRLSAGFRLDPVWRLYTSLAQGYKPGGYNLAPSSVADARAFSRERATSYEVGARWN 511 Query: 494 TPDQKVSARAAVFQIESRNTQLYQG-IVGSQYLTNAGQARSRGIEANLSAEVLRNWTLGL 552 Q V A ++I+ ++ QLYQG VG Q L N G +RS G+E +L+ + R WTL Sbjct: 512 --GQHVQGSIAAYRIDIKDAQLYQGDTVGYQSLRNVGDSRSTGLEFDLAWSLSRQWTLNA 569 Query: 553 DAQVVDSIFTDYHVNSSTDYTG-NKLPFVPRYILAASLSGRIATDVGMVRPRVAARYIGQ 611 V + FT Y +S+ G N++PF PR+ L L G +++ VG RP++ ARY+G Sbjct: 570 SGFVNRARFTRYVASSACTACGSNEVPFAPRHGLKLGLQGDLSSPVGNWRPQLNARYLGA 629 Query: 612 QQFDAANSLKQQGYMLVDGQVSWRATSKLDVSFYINNAFDKRYLNYAATSNGLRFGTLGE 671 Q FD AN+L+Q Y L+D ++W+ +++FY +N D+ Y Y A S G + G + Sbjct: 630 QYFDTANTLRQSSYTLIDAALAWQVRLDTELAFYAHNLTDRAYRTY-AFSGGAQLGNFAQ 688 Query: 672 ---GREFGVKLRY 681 GR G+ L Y Sbjct: 689 VASGRTLGLTLSY 701 >gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 82/303 (27%), Positives = 137/303 (45%), Gaps = 37/303 (12%) Query: 372 PTFGTDSSQTTTDSAAVFVDGTWHVTPRWDVSAGARLVQDKAETS----GVLPIEGVAAY 427 PT TD+S+ S +++ ++ RW + AG R ++ + G + + AY Sbjct: 412 PTANTDTSERQI-STGLYLQDQLSLSERWRLLAGVRADAFRSTLNNLRNGAVTRQDKHAY 470 Query: 428 ASSTSSNKALGKLSTGYQLTPSLRSYASLSQGYKPGGYNLQPTSAND--SRSYRPETSLN 485 + +L Y LTPS Y S S+ ++P S +D ++ PETS Sbjct: 471 SP---------RLGLTYLLTPSWSVYVSASKSFRP-------NSGSDVSGNAFSPETSRA 514 Query: 486 YEMGLKFNTPDQKVSARAAVFQIESRNTQLYQGIVGSQYLTNAGQARSRGIEANLSAEVL 545 E GLKF + D++ A AVF I +N L + AG+ RS+G+E + +A + Sbjct: 515 AEAGLKFQSEDKRSGATLAVFDITKQNV-LTTDPANPNFSIAAGEVRSKGVELDANARLG 573 Query: 546 RNWTLGLDAQVVDSIFTDYHVN-SSTDYTGNKLPFVPRYILAASLSGRIATDVGMVRPRV 604 +W + + +TD +V+ +T G++L +PR +ASL P Sbjct: 574 HHWRV-----TGNLAYTDAYVSRDNTLPVGSRLVNIPRS--SASLLAVFEDADAHGAPYG 626 Query: 605 AA---RYIGQQQFDAANSLKQQGYMLVDGQVSWRATSKLDVSFYINNAFDKRYLNYAATS 661 Y+G++ D A S Y+ W+ T K+ +S +NN F+KRY Y+++ Sbjct: 627 VGGGLNYVGRRTGDQAGSFMLPSYVTARALAYWQFTPKMKLSLDVNNLFNKRY--YSSSY 684 Query: 662 NGL 664 N L Sbjct: 685 NSL 687 >gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 704 Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 66/250 (26%), Positives = 115/250 (46%), Gaps = 29/250 (11%) Query: 443 GYQLTPSLRS--YASLSQGYKPGGYNLQPTSANDSRSYRPETSLNYEMGLKFNTPDQKVS 500 G PSL Y S S+ ++P G + A ++ PE + N E G K++ + + S Sbjct: 471 GLVWQPSLTQSYYLSWSRSFQPSGESF--ALATNNADLAPEQTRNTEAGAKYDFWEGRAS 528 Query: 501 ARAAVFQIESRNTQ--LYQGIVGSQYLTNAGQARSRGIEANLSAEVLRNWTLGLDAQVVD 558 A +VF++E N + L G+V G+ R+ G E + SA++ + W L ++ Sbjct: 529 ATVSVFRLERDNIKSALPNGVV-----IPVGKQRTDGAELSFSADLKQGWKLLAGYAWLN 583 Query: 559 SIFTDYHVNSSTDYTGNKLPFVPRYILAASLSGRIATDVGMVR-------PRVAARYIGQ 611 ++ T+ +SS D N +PF + A+L+ R + ++ + R A +G Sbjct: 584 AVITE---SSSFD---NGVPFKGK---NATLTPRHSGNLWLTRELGEGLVVGGGANAVGA 634 Query: 612 QQFDAANSLKQQGYMLVDGQVSWRATSKLDVSFYINNAFDKRYLNYAATSNGLRFGTLGE 671 + + N++ GY+ VD ++R TSK +V I N F+ Y+ +N G Sbjct: 635 RFANPGNTVTLPGYVTVDAMAAYR-TSKYEVQLNIGNLFNTGYIISGHGTNP-NLSMPGA 692 Query: 672 GREFGVKLRY 681 R + LRY Sbjct: 693 PRNVALTLRY 702 >gi|300310281|ref|YP_003774373.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 715 Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 72/312 (23%), Positives = 126/312 (40%), Gaps = 25/312 (8%) Query: 376 TDSSQTTTDSAAVFVDGTWHVTPRWDVSAGARLVQ-DKAETSGVLPIEGVAAYASSTSSN 434 T SS A+FV ++P+W + G R Q +++ S V P+ + S+ S Sbjct: 425 TSSSDENQRVKALFVQDQLSLSPQWKLLGGLRWDQYNQSVVSRVAPVGTTSQRQSAVSPR 484 Query: 435 KALGKLSTGYQLTPSLRSYASLSQGYKPGGYNLQPTSAND--SRSYRPETSLNYEMGLKF 492 + L + S Y G + + S D R + P+ S +YE GLK Sbjct: 485 AGISYLPNAW------------SSVYLSAGKSFRGNSGVDVNGRPFDPQRSTSYEAGLKL 532 Query: 493 NTPDQKVSARAAVFQIESRNTQLYQGIVGSQYLTNAGQARSRGIEANLSAEVLRNWTLGL 552 + D+++ A AV+ I N ++ AG+ +S G EA+ ++ NW L Sbjct: 533 QSTDERLGANFAVYDITKTNVLTTSD--NPNFMAAAGEVKSTGFEADAYGQLNANWRLSA 590 Query: 553 DAQVVDSIFTDYHVNSSTDYTGNKLPFVPRYILAASLSGRIATDVGM-VRPRVAARYIGQ 611 + D+ + T TG +L +P Y + A G Y+G Sbjct: 591 NFSWDDARVS----KDRTLPTGTRLANIPAYSAGLLVMREDALANGARYGVGGGVNYVGN 646 Query: 612 QQFDAANSLKQQGYMLVDGQVSWRATSKLDVSFYINNAFDKRYLNYAATSNGLRFGTLGE 671 + +AA++ Y LV W+ + + +S ++N F++ Y Y + N L + G Sbjct: 647 RSGNAADTYSLPAYTLVKLLSYWQVSKNVRLSLDVHNLFNRNY--YPGSWNNL-YVMPGA 703 Query: 672 GREFGVKLRYDF 683 R +++ D Sbjct: 704 ERTVVARMKIDL 715 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.131 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,003,324 Number of extensions: 80873 Number of successful extensions: 304 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 291 Number of HSP's successfully gapped: 10 Length of query: 683 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 591 Effective length of database: 1,184,250 Effective search space: 699891750 Effective search space used: 699891750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)