BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2200.p (614 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 218 9e-58 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 214 1e-56 gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPas... 209 4e-55 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 209 5e-55 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 199 5e-52 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 218 bits (556), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 134/332 (40%), Positives = 187/332 (56%), Gaps = 18/332 (5%) Query: 296 GSLDLATLCFFVFFTPGLGNLLTKLAGFSNRFVQQQQAFEHLDILLGAPEQSEGSHTSLP 355 GS+ L + F L L L Q E L LL + S + P Sbjct: 295 GSMTLGDMVLVNAFMIQLYIPLNFLGVLYREIKQSLADMERLFSLLEEHREVADSADAKP 354 Query: 356 EKI---TIRCEQVSFSYHQ-QAVLDNLSLTLHPGTTTALVGGSGSGKSTLVKLLLRHWDV 411 K + + V FSY + + +L ++ T+ GTTTA+VG SGSGKSTL +LL R +DV Sbjct: 355 LKTQGANLHFDHVDFSYERNRQILFDVDFTVQAGTTTAVVGHSGSGKSTLSRLLYRFYDV 414 Query: 412 TSGRILLGERPINDYTRETLRQNITCIFQENQLFDMSIADNIRLGKPTATEEEVIQAARA 471 +G I + + + T+ +LRQ I + Q+ LF+ +I NI GKP AT E+++ AA+A Sbjct: 415 DAGAIRIDGQDLRTVTQASLRQAIGIVPQDTVLFNDTIEYNIAYGKPGATREQIVAAAKA 474 Query: 472 AQAHEFIMALPQGYQTLLAPGSALLSGGEQQRLAIARAILKNAPILLLDEATSQADALNE 531 A H+FI +LP GY +++ LSGGE+QR+AIAR +LK+ IL+ DEATS D+ E Sbjct: 475 AYIHDFIESLPDGYASMVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAE 534 Query: 532 HRIQLALSALAADKTVLVIAHRLSSIAHADQIVVLEQGRVVEQGQHAALLLQQGRYASLW 591 IQ L +A ++T LVIAHRLS+I +A QI+VL+ GR+VE+G HA LL+ G YA +W Sbjct: 535 QAIQQQLEEIARERTTLVIAHRLSTIVNAQQILVLDHGRIVERGTHAGLLMAGGLYAQMW 594 Query: 592 QMQHAHA--------------VTPAQPTSEPS 609 Q A A PA+P +EPS Sbjct: 595 LRQQAGADEEGGSPAPLLEAVAAPAEPGAEPS 626 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 214 bits (546), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 162/496 (32%), Positives = 251/496 (50%), Gaps = 15/496 (3%) Query: 112 AADIQTELRGQLLSRLVNVPLGFFQ-DHSSQKIRQVVIDDVEQLEDGLAHLIPELTSHFI 170 ++ I EL +L S L+++PL +FQ + I +V ++E + L L + Sbjct: 229 SSKIDVELGSRLFSHLLSLPLSYFQVRRAGDSIARV--RELENIRSFLTGNAMTLVLDIM 286 Query: 171 APLIVIAALFAVDWRLSLASLSSL----VLGMVACMLLMRKRHDIAQDFYLNQGKLFKAM 226 + + + LSL L+S+ +L +V LL + +D NQ L + + Sbjct: 287 FSFVFLGVMLWYSVSLSLIVLASIPVYVLLSLVFTPLLRERLNDKFNKSAENQSFLVETL 346 Query: 227 TEILRTMPAARLFNSGAAMQARVEEANGDYVGTAHRWVRGALLPNLVMQVLVSSPLLLLL 286 T M + Q + ++ YV +LL + + ++ + ++ Sbjct: 347 T----GMDTVKAMAVEPRWQQKWDKQLAAYVAAGLTTTNISLLASGAVGLVSKLVTVGIM 402 Query: 287 PLGLWWHQQGSLDLATLCFFVFFTPGLGNLLTKLAGFSNRFVQQQQAFEHLDILLGAPEQ 346 LG + + + L F + + + +LA N F Q + L +L A + Sbjct: 403 WLGALLVVKNEMSVGELVAFNMLAGQVASPILRLAQLWNDFQQIGISMSRLADVLDARTE 462 Query: 347 SEGSHTSLPE-KITIRCEQVSFSYHQQA--VLDNLSLTLHPGTTTALVGGSGSGKSTLVK 403 G+ T LP I + VSF Y + V+ LSL + PG +VG SGSGKSTL K Sbjct: 463 VAGNRTRLPRVNGAISFDLVSFRYRPETPEVIRGLSLQIRPGEVIGIVGRSGSGKSTLAK 522 Query: 404 LLLRHWDVTSGRILLGERPINDYTRETLRQNITCIFQENQLFDMSIADNIRLGKPTATEE 463 L+ R + +GRI + + I +LRQ I + QEN LF SI DNI L P+ E Sbjct: 523 LVQRLYICETGRISVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALADPSTPIE 582 Query: 464 EVIQAARAAQAHEFIMALPQGYQTLLAPGSALLSGGEQQRLAIARAILKNAPILLLDEAT 523 ++I+AA+ A AH+FI LP+GY T++ + LSGG++QR+AIARA++ N IL+ DEAT Sbjct: 583 QIIEAAKLAGAHDFICELPEGYDTMVGEQGSGLSGGQRQRIAIARALITNPGILIFDEAT 642 Query: 524 SQADALNEHRIQLALSALAADKTVLVIAHRLSSIAHADQIVVLEQGRVVEQGQHAALL-L 582 S D +E IQ + + A +TVL+IAHRLS++ AD+I+V+E+GRV E G H L+ L Sbjct: 643 SALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDADRIIVMERGRVAESGSHDELIDL 702 Query: 583 QQGRYASLWQMQHAHA 598 G YA L ++Q HA Sbjct: 703 PGGIYAHLHRLQAGHA 718 >gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 618 Score = 209 bits (533), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 118/251 (47%), Positives = 157/251 (62%), Gaps = 11/251 (4%) Query: 355 PEKIT---IRCEQVSFSYHQQA---VLDNLSLTLHPGTTTALVGGSGSGKSTLVKLLLRH 408 P K++ +R E VSFSY A V+D L L + PG LVG SG+GKST+V LLLR Sbjct: 352 PLKVSQGELRFEGVSFSYGGAAPRPVVDKLDLVIRPGEKIGLVGRSGAGKSTIVNLLLRF 411 Query: 409 WDVTSGRILLGERPINDYTRETLRQNITCIFQENQLFDMSIADNIRLGKPTATEEEVIQA 468 +D+ GRI + + I T+++LR I + Q+ L S+ +NI G+P A++ E+ A Sbjct: 412 YDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRENITYGRPDASDAEMTHA 471 Query: 469 ARAAQAHEFIMALPQ-----GYQTLLAPGSALLSGGEQQRLAIARAILKNAPILLLDEAT 523 A A+AH+FI L GY + LSGG++QR+AIAR +LK+APILLLDEAT Sbjct: 472 AERAEAHDFIGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEAT 531 Query: 524 SQADALNEHRIQLALSALAADKTVLVIAHRLSSIAHADQIVVLEQGRVVEQGQHAALLLQ 583 S D+ E IQ +L L KTV+ IAHRLS+IA D+++VL+QGR+VEQG HA LL Sbjct: 532 SALDSEVEAAIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVEQGSHAELLAA 591 Query: 584 QGRYASLWQMQ 594 G YA LW Q Sbjct: 592 NGLYARLWSHQ 602 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 209 bits (532), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 167/501 (33%), Positives = 259/501 (51%), Gaps = 29/501 (5%) Query: 110 LMAADIQTELRGQLLSRLVNVPLGFFQDHSSQKIRQVVIDDVEQLEDGLAHLIPELTSHF 169 L++ I +LR S L+ + +F + + + + +++ L+ + + Sbjct: 252 LVSERIGADLRTTTYSHLLRLSQEYFGGKRTGDLMARIGSETDRICVFLSLHLLDFAIDV 311 Query: 170 IAPLIVIAALFAVDWRLSLASLSSLVLGMVACMLLM---RKRHDIAQDFYLNQGKLFKAM 226 + ++ A L +++ L+L +L L L +A M+ + R RH + +++ + Sbjct: 312 LMIIMTAAILISINPWLALVTL--LPLPFIAWMIHVVRDRLRHGFEK-----IDRIWSEV 364 Query: 227 TEIL-RTMPAARLFNSGAAMQ---ARVEEANGDYVGTAHRWVRGALLPNLVMQVLVSSPL 282 T +L T+P R+ + A + AR EAN + R + L + L L Sbjct: 365 TNVLADTIPGIRVVKAFAQEKREVARFREANRHNLMVNDRVNKIWSLFTPTVTFLTEVGL 424 Query: 283 LLLLPLGLWWHQQGSLDLATLCFFVFFTPGLGNLLTKLAGFSNRFVQQQQA-------FE 335 L++ G+W + + L F+ + + T+L S Q+A F+ Sbjct: 425 LVVWVFGIWQVSSNQITVGVLTAFLAY---ISRFYTRLDSMSRIVSVTQKAAAGAKRIFD 481 Query: 336 HLDILLGAPEQSEGSHTSLPEKI--TIRCEQVSFSYHQQAVLDNLSLTLHPGTTTALVGG 393 LD + PE + H EK+ I + F Y +AV+ N+SL++ PG LVG Sbjct: 482 ILDHVSSVPEPANPVHL---EKVQGAIEVRNIGFRYGNRAVIRNMSLSIAPGEMIGLVGH 538 Query: 394 SGSGKSTLVKLLLRHWDVTSGRILLGERPINDYTRETLRQNITCIFQENQLFDMSIADNI 453 SGSGKST+V L+ R +DV+ G I + I R+NI + QE LF +IA+NI Sbjct: 539 SGSGKSTMVNLICRFYDVSEGAIRIDGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENI 598 Query: 454 RLGKPTATEEEVIQAARAAQAHEFIMALPQGYQTLLAPGSALLSGGEQQRLAIARAILKN 513 GKP AT EE+I AARAA AHEFI+ LPQGY +L+ LSGGE+QR++IARA+L + Sbjct: 599 AYGKPEATREEIIAAARAAHAHEFILRLPQGYDSLVGERGQALSGGERQRISIARALLID 658 Query: 514 APILLLDEATSQADALNEHRIQLALSALAADKTVLVIAHRLSSIAHADQIVVLEQGRVVE 573 IL+LDEATS D E IQ AL L +T + IAHRLS++ AD++VVL++G+VVE Sbjct: 659 PRILILDEATSSVDTTTEKEIQKALDNLVQGRTTIAIAHRLSTLRKADRLVVLDRGQVVE 718 Query: 574 QGQHAALLLQQGRYASLWQMQ 594 G H L+ ++G Y L+Q Q Sbjct: 719 VGNHEELMAREGHYYKLYQAQ 739 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 199 bits (506), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 162/427 (37%), Positives = 225/427 (52%), Gaps = 28/427 (6%) Query: 189 ASLSSLVLGMVACMLL--------MRKRHDIAQDFYLNQGKLFKAMTEILRTMPAARLFN 240 A L+S+++ M+A ++L +RK +QD + + EIL MP + F Sbjct: 191 ARLTSIIIVMLAAVVLPIVFYGRRVRKLSRASQDRVADASAM---AGEILNAMPTVQAFT 247 Query: 241 SGAAMQARVEEANGDYVGTAHRWVRGALLPNLVMQVLVSSPLLLLLPLGLWWHQQGSLDL 300 R ++ GTA VR L +V +LV ++ +L LG +GS+ Sbjct: 248 HEEIEARRFAQSVERAFGTAMERVRARSLLTVVAILLVFGAIVFVLWLGAHAVMEGSMSG 307 Query: 301 ATLCFFVFFTPGLGNLLTKLAGFSNRFVQQQQAFEHLDILLGA--PEQSEGSHTSLPEKI 358 L F+ + + L L+ + A E L LL A P QS LPEK+ Sbjct: 308 GELGQFILYASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAHSPVQS----VLLPEKL 363 Query: 359 TIR--------CEQVSFSYHQQA---VLDNLSLTLHPGTTTALVGGSGSGKSTLVKLLLR 407 R + V F Y + L LSLT+ PG T A+VG SG+GK+TL +LLLR Sbjct: 364 PPRTANGAALTVQGVDFHYPSRPGHPSLTQLSLTVQPGETVAIVGPSGAGKTTLFQLLLR 423 Query: 408 HWDVTSGRILLGERPINDYTRETLRQNITCIFQENQLFDMSIADNIRLGKPTATEEEVIQ 467 +D G+ILL I + LR I + Q+ +F + +NIR G+P A++ EVI Sbjct: 424 FYDPQQGQILLDGVDIRYLDLQALRGAIGIVPQDTVIFSANAMENIRFGRPEASDAEVIA 483 Query: 468 AARAAQAHEFIMALPQGYQTLLAPGSALLSGGEQQRLAIARAILKNAPILLLDEATSQAD 527 AA+ A AHEFI LP Y L LSGG++QR+AIARA+LKN P+LLLDEATS D Sbjct: 484 AAQMAAAHEFIERLPGSYACFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALD 543 Query: 528 ALNEHRIQLALSALAADKTVLVIAHRLSSIAHADQIVVLEQGRVVEQGQHAALLLQQGRY 587 A +E +Q AL A +T LVIAHRL+++ AD+I+VLE GR+VE G HA L+ + G Y Sbjct: 544 AESERLVQGALEAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVESGTHAELVARDGLY 603 Query: 588 ASLWQMQ 594 A L +Q Sbjct: 604 AGLAALQ 610 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,608,203 Number of extensions: 58877 Number of successful extensions: 593 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 480 Number of HSP's successfully gapped: 130 Length of query: 614 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 523 Effective length of database: 1,188,985 Effective search space: 621839155 Effective search space used: 621839155 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)