BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2199.p (589 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 221 1e-58 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 213 3e-56 gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPas... 201 1e-52 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 194 1e-50 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 192 6e-50 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 221 bits (564), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 132/344 (38%), Positives = 195/344 (56%), Gaps = 11/344 (3%) Query: 241 QFYQRTSWKLAPGLLLANSLFGLVMAAALSFAGWRYLDGHLDGAQLLIVLALLSTLSQPI 300 Q Y+R + K L L N+ ++A A++ WR G +DG+ L + L++ I Sbjct: 253 QRYERAAVKSQSSLSLLNTGQSAIIAIAVTLILWRATVGVIDGSMTLGDMVLVNAFM--I 310 Query: 301 ESLLAQRFQALASKEAMAAHAALLAHTALPDGHAEVAAGE---------AQIRLEQVSFG 351 + + F + +E + A + +L + H EVA A + + V F Sbjct: 311 QLYIPLNFLGVLYREIKQSLADMERLFSLLEEHREVADSADAKPLKTQGANLHFDHVDFS 370 Query: 352 YRPGEPVLHNLDLDFPAGKTTVIVGPSGAGKSTLLQLLARFHDTSSGRILVDGQDIRAVA 411 Y +L ++D AG TT +VG SG+GKSTL +LL RF+D +G I +DGQD+R V Sbjct: 371 YERNRQILFDVDFTVQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIRIDGQDLRTVT 430 Query: 412 LGDHLARISMVFQDGLLFQDSIASNIAAGARHATPEQLRAALRAAQCEAFVDAMPDGADT 471 I +V QD +LF D+I NIA G AT EQ+ AA +AA F++++PDG + Sbjct: 431 QASLRQAIGIVPQDTVLFNDTIEYNIAYGKPGATREQIVAAAKAAYIHDFIESLPDGYAS 490 Query: 472 QLAELGRNLSGGQKQRLTIARALLKDAPIVLFDEMTSALDAENDHAIRCALRELLPGRTT 531 + E G LSGG+KQR+ IAR LLKD I++FDE TSALD+ + AI+ L E+ RTT Sbjct: 491 MVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTT 550 Query: 532 IMVAHRLDHAVAADQVVVMDQGKVIDCGSHAELLRRCTLYQQLW 575 +++AHRL V A Q++V+D G++++ G+HA LL LY Q+W Sbjct: 551 LVIAHRLSTIVNAQQILVLDHGRIVERGTHAGLLMAGGLYAQMW 594 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 213 bits (543), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 175/535 (32%), Positives = 271/535 (50%), Gaps = 31/535 (5%) Query: 66 YWTVLLACACPL-----LRLLMTSSAQTALFMEGYRVTGQLRSSLVAHAMKVPLGLLARA 120 Y+ L AC L LR M S G RVT LRS++ AH + Sbjct: 93 YFLALFGVACILGVATALRFYMVS-------WLGERVTADLRSAVYAHVVTQSPEFFETT 145 Query: 121 FPSERLSRFIVHDLRWVEEFSSFGIAQQISNALLLTALIGALGWLDLTLALLVVVLLAVA 180 E LSR + D ++ I+ + NALL + L + L +++V+LA Sbjct: 146 KTGEVLSR-LTTDTTLIQTLVGTSISMALRNALLFIGGMSMLFFTSARLTSIIIVMLAAV 204 Query: 181 VLVLEQIGRRMLASARQQQAQLEQVSRHLGELSAGLPVLRAYQDDARIKQRFTQHNQQLR 240 VL + GRR+ +R Q ++ S GE+ +P ++A+ + +RF Q + R Sbjct: 205 VLPIVFYGRRVRKLSRASQDRVADASAMAGEILNAMPTVQAFTHEEIEARRFAQSVE--R 262 Query: 241 QFYQRTSWKLAPGLLLANSLFGLVMAAALSFAGW----RYLDGHLDGA---QLLIVLALL 293 F A LL ++ L++ A+ F W ++G + G Q ++ +L+ Sbjct: 263 AFGTAMERVRARSLLTVVAI--LLVFGAIVFVLWLGAHAVMEGSMSGGELGQFILYASLV 320 Query: 294 STLSQPIESLLAQRFQALASKEAM----AAHAALLAHTALPDGHAEVAAGEAQIRLEQVS 349 + + ++ +A + E + AAH+ + + LP+ A A + ++ V Sbjct: 321 AGSLGALSEVMGDTQRAAGATERLLDLLAAHSPVQS-VLLPEKLPPRTANGAALTVQGVD 379 Query: 350 FGY--RPGEPVLHNLDLDFPAGKTTVIVGPSGAGKSTLLQLLARFHDTSSGRILVDGQDI 407 F Y RPG P L L L G+T IVGPSGAGK+TL QLL RF+D G+IL+DG DI Sbjct: 380 FHYPSRPGHPSLTQLSLTVQPGETVAIVGPSGAGKTTLFQLLLRFYDPQQGQILLDGVDI 439 Query: 408 RAVALGDHLARISMVFQDGLLFQDSIASNIAAGARHATPEQLRAALRAAQCEAFVDAMPD 467 R + L I +V QD ++F + NI G A+ ++ AA + A F++ +P Sbjct: 440 RYLDLQALRGAIGIVPQDTVIFSANAMENIRFGRPEASDAEVIAAAQMAAAHEFIERLPG 499 Query: 468 GADTQLAELGRNLSGGQKQRLTIARALLKDAPIVLFDEMTSALDAENDHAIRCALRELLP 527 L E G LSGGQ+QR+ IARALLK+ P++L DE TSALDAE++ ++ AL + Sbjct: 500 SYACFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQGALEAAMV 559 Query: 528 GRTTIMVAHRLDHAVAADQVVVMDQGKVIDCGSHAELLRRCTLYQQLWSAWSQGQ 582 GRTT+++AHRL AD+++V++ G++++ G+HAEL+ R LY L + Q Q Sbjct: 560 GRTTLVIAHRLATVQRADRIIVLEHGRIVESGTHAELVARDGLYAGLAALQFQTQ 614 >gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 618 Score = 201 bits (512), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 146/450 (32%), Positives = 224/450 (49%), Gaps = 32/450 (7%) Query: 153 LLLTALIGALGWLDLTLALLVVVLLAVAVLVLEQIGRRMLASARQQQAQLEQVSRHLGEL 212 + LIG +G D+ + + LA + L R+ A AR Q ++ + + Sbjct: 167 IYFATLIGVVGSFDIWMLAPFFIWLAAFAVALRYFVPRLSAVARNQADARSLMTGRITDA 226 Query: 213 SAGLPVLRAYQDDAR--------IKQRFTQHNQQLRQFYQRTSWKLAPGLLLANSLFGLV 264 + ++ + R +++ NQQ+R L G + N L +V Sbjct: 227 YTNIATVKLFSHAGREADYARSAMREFLVTVNQQMR---------LVSGFEVVNHLLNMV 277 Query: 265 M---AAALSFAGWRYLDGHLDGAQLLIVLAL-LSTLSQPIESLLAQRFQALAS-KEAMAA 319 + A +S W + +AL L+ ++ + ++ F+ + + ++ + Sbjct: 278 LIIGATGVSLYLWTQGKVGVGAVAASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGINT 337 Query: 320 HAALLAHTALPDGHA-EVAAGEAQIRLEQVSFGYRPG--EPVLHNLDLDFPAGKTTVIVG 376 A PD +V+ GE +R E VSF Y PV+ LDL G+ +VG Sbjct: 338 LARAHDVKDAPDAQPLKVSQGE--LRFEGVSFSYGGAAPRPVVDKLDLVIRPGEKIGLVG 395 Query: 377 PSGAGKSTLLQLLARFHDTSSGRILVDGQDIRAVALGDHLARISMVFQDGLLFQDSIASN 436 SGAGKST++ LL RF+D GRI +DGQDI V A+I MV QD L S+ N Sbjct: 396 RSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVREN 455 Query: 437 IAAGARHATPEQLRAALRAAQCEAFVDAMPD-----GADTQLAELGRNLSGGQKQRLTIA 491 I G A+ ++ A A+ F+ + D G D + E G LSGGQ+QR+ IA Sbjct: 456 ITYGRPDASDAEMTHAAERAEAHDFIGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIA 515 Query: 492 RALLKDAPIVLFDEMTSALDAENDHAIRCALRELLPGRTTIMVAHRLDHAVAADQVVVMD 551 R +LKDAPI+L DE TSALD+E + AI+ +L +L+ G+T + +AHRL A D+++V+D Sbjct: 516 RVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLD 575 Query: 552 QGKVIDCGSHAELLRRCTLYQQLWSAWSQG 581 QG++++ GSHAELL LY +LWS S G Sbjct: 576 QGRIVEQGSHAELLAANGLYARLWSHQSGG 605 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 194 bits (494), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 163/561 (29%), Positives = 288/561 (51%), Gaps = 21/561 (3%) Query: 28 YLRALCIMMLDGLLSA-----IPYLCAAILLGSLLRGAQAAPPY--WTVLLAC-ACPLLR 79 Y + L + + +++A +PY+ +L +G P + W V +A +R Sbjct: 16 YKKRLAVAFIAMIVTAATEPVVPYIFQVLLD----KGFVGKPAFSLWLVPVAVIGIFFIR 71 Query: 80 LLMTSSAQTALFMEGYRVTGQLRSSLVAHAMKVPLGLLARAFPSERLSRFIVHDLRWVEE 139 + T ++ + R+ +LR + A + +PL A + ++ ++ +++ + + Sbjct: 72 GIATFTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINS-MMFEVQQIID 130 Query: 140 FSSFGIAQQISNALLLTALIGALGWLDLTLALLVVVLLAVAVLVLEQIGRRMLASARQQQ 199 + + +AL + L+ L +L+ L ++ +VLL + LV+ G+R+ R Sbjct: 131 MVTKVFTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGKRLKKLNRDSL 190 Query: 200 AQLEQVSRHLGELSAGLPVLRAYQDDARIKQRFTQHNQQLRQFYQRTSWKLAPGLLLANS 259 A ++++ + E + V++ + K+RF + + LR + R + + + + Sbjct: 191 AVNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTAAFSSTVPITQL 250 Query: 260 LFGLVMAAALSFAGWRYLDGHLD-GAQLLIVLALLSTLSQPIESLLAQRFQALASKEAMA 318 + +A + A + +G + G + + A+L L+ P++ L A+ L A A Sbjct: 251 MTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLT-PLKQL-AEINGPLQRGMAAA 308 Query: 319 AHAALLAHTALPDGHAEVAAGEA--QIRLEQVSFGYRPGEP--VLHNLDLDFPAGKTTVI 374 L E AG A Q+ +V F Y PG L N++L AG+T Sbjct: 309 EEVYKLIDKTTERITGEALAGRATGQLDFVEVGFAY-PGHEQLALKNINLHVEAGETIAF 367 Query: 375 VGPSGAGKSTLLQLLARFHDTSSGRILVDGQDIRAVALGDHLARISMVFQDGLLFQDSIA 434 VG SG GKSTL+ L+ F+ SSG I +DG+DI ++L +I+MV Q+ +LF D++A Sbjct: 368 VGMSGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLPSLRQQIAMVNQNTVLFDDTLA 427 Query: 435 SNIAAGARHATPEQLRAALRAAQCEAFVDAMPDGADTQLAELGRNLSGGQKQRLTIARAL 494 +NIA G + P ++ AA+ AA V +P+G T+L + G LSGGQ+QR+ IARA+ Sbjct: 428 ANIAYGDANPDPARVEAAVEAAHLTDVVAGLPEGLQTRLGDNGSRLSGGQRQRVAIARAI 487 Query: 495 LKDAPIVLFDEMTSALDAENDHAIRCALRELLPGRTTIMVAHRLDHAVAADQVVVMDQGK 554 KDAPI++ DE TSALD E++ A++ AL L+ GRTT ++AHRL AD++VV+ G+ Sbjct: 488 YKDAPILILDEATSALDTESERAVQAALDRLMQGRTTFVIAHRLSTIERADRIVVLAHGQ 547 Query: 555 VIDCGSHAELLRRCTLYQQLW 575 + + G+H LL + +Y L+ Sbjct: 548 IAEIGTHQALLEQEGVYANLY 568 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 192 bits (488), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 130/380 (34%), Positives = 210/380 (55%), Gaps = 10/380 (2%) Query: 204 QVSRHLGELSAGLPVLRAYQDDARIKQRFTQHNQQLRQFYQRTS--WKLAPGLLLANSLF 261 +V+ L + G+ V++A+ + R RF + N+ R + W L + + Sbjct: 363 EVTNVLADTIPGIRVVKAFAQEKREVARFREANRHNLMVNDRVNKIWSLFTPTVTFLTEV 422 Query: 262 GLVMAAALSFAGWRYLDGHLDGAQLLIVLALLSTLSQPIESLLAQRFQALASKEAMAAHA 321 GL++ F W+ + L LA +S ++S+ R ++ K A A Sbjct: 423 GLLVVWV--FGIWQVSSNQITVGVLTAFLAYISRFYTRLDSM--SRIVSVTQKAAAGAKR 478 Query: 322 A--LLAH-TALPDGHAEVAAGEAQIRLEQVSFGYRPGE-PVLHNLDLDFPAGKTTVIVGP 377 +L H +++P+ V + Q +E + G+R G V+ N+ L G+ +VG Sbjct: 479 IFDILDHVSSVPEPANPVHLEKVQGAIEVRNIGFRYGNRAVIRNMSLSIAPGEMIGLVGH 538 Query: 378 SGAGKSTLLQLLARFHDTSSGRILVDGQDIRAVALGDHLARISMVFQDGLLFQDSIASNI 437 SG+GKST++ L+ RF+D S G I +DG DIR++ + ++ I +V Q+ LF +IA NI Sbjct: 539 SGSGKSTMVNLICRFYDVSEGAIRIDGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENI 598 Query: 438 AAGARHATPEQLRAALRAAQCEAFVDAMPDGADTQLAELGRNLSGGQKQRLTIARALLKD 497 A G AT E++ AA RAA F+ +P G D+ + E G+ LSGG++QR++IARALL D Sbjct: 599 AYGKPEATREEIIAAARAAHAHEFILRLPQGYDSLVGERGQALSGGERQRISIARALLID 658 Query: 498 APIVLFDEMTSALDAENDHAIRCALRELLPGRTTIMVAHRLDHAVAADQVVVMDQGKVID 557 I++ DE TS++D + I+ AL L+ GRTTI +AHRL AD++VV+D+G+V++ Sbjct: 659 PRILILDEATSSVDTTTEKEIQKALDNLVQGRTTIAIAHRLSTLRKADRLVVLDRGQVVE 718 Query: 558 CGSHAELLRRCTLYQQLWSA 577 G+H EL+ R Y +L+ A Sbjct: 719 VGNHEELMAREGHYYKLYQA 738 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,607,266 Number of extensions: 60417 Number of successful extensions: 708 Number of sequences better than 1.0e-08: 119 Number of HSP's gapped: 603 Number of HSP's successfully gapped: 123 Length of query: 589 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 498 Effective length of database: 1,188,985 Effective search space: 592114530 Effective search space used: 592114530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)