BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2193.p (347 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311747|ref|YP_003775839.1| Fe2+-dicitrate sensor membrane ... 406 e-114 gi|300313764|ref|YP_003777856.1| Fe2+-dicitrate sensor membrane ... 159 2e-40 gi|300309380|ref|YP_003773472.1| Fe2+-dicitrate sensor membrane ... 147 2e-36 gi|300312829|ref|YP_003776921.1| Fe2+-dicitrate sensor membrane ... 102 5e-23 gi|300313795|ref|YP_003777887.1| transmembrane sensor protein [H... 89 4e-19 >gi|300311747|ref|YP_003775839.1| Fe2+-dicitrate sensor membrane protein [Herbaspirillum seropedicae SmR1] Length = 342 Score = 406 bits (1044), Expect = e-114, Method: Compositional matrix adjust. Identities = 229/342 (66%), Positives = 257/342 (75%), Gaps = 4/342 (1%) Query: 7 PQPPAAAADPVLDQAIAWLVKLRADAGRTAPDAVLQARIDAWRLADARHEAVWSELMAAE 66 P P DPVLDQAIAWLVKLRA G A LQA I AWR AD RHE VWSELMA+E Sbjct: 2 PSNPIPLQDPVLDQAIAWLVKLRAFPGDAAVAPELQAGIAAWRAADPRHEQVWSELMASE 61 Query: 67 AQFQRLVALPVPPEQWQQPLSELTRTRTRRQARRRWLGGVTLGLGGLALGALAARQAGLW 126 QFQRLVALPVP QW PL L + R Q+RRRW+G LGLG +ALGA+AARQAGL+ Sbjct: 62 EQFQRLVALPVPASQWHGPLKRLNQRRQHSQSRRRWMGNAMLGLGAIALGAVAARQAGLF 121 Query: 127 EGLDGQRYATATGQHRRLALGDGTQLTLDTDTSVQLRFDGRQRLLVLQQGDIFIDTGKDA 186 E LDG YAT TG R+L LGDGT L L+T +SVQLRFD +RLL+L+QG+IFIDTG DA Sbjct: 122 EALDGASYATRTGDQRQLRLGDGTALALNTSSSVQLRFDDTRRLLLLRQGEIFIDTGADA 181 Query: 187 LAAQHRPFLVQTAQARLQALGTRFDVRQQQGSTRLTVLEGRVAT---GQEPRTVIEPGET 243 HRPF VQTA ARLQALGTRFDVRQ T+LTVLEGRVA G +P V +PGE Sbjct: 182 QWPHHRPFWVQTAHARLQALGTRFDVRQHGDGTQLTVLEGRVAVHVAGVDP-LVAQPGEI 240 Query: 244 VDIDAQGHLRRQAAGSAAMDPTAWLEGSLVARQMRLAEVLAEIARYRHGWLQCDAAVAQL 303 VDI G L R+AA ++AMDPTAWLE SLV RQMRLA+V+A++ARYR GWLQCD AVA Sbjct: 241 VDIHPDGRLVRRAARASAMDPTAWLEQSLVVRQMRLADVVAQLARYRSGWLQCDPAVADW 300 Query: 304 RVSGVFQLQDSDAALESLAQALPVAIERRTRFWVRVVPARGR 345 +VSGVFQLQD+D ALE+LAQALP+ IERRTRFWVRV A R Sbjct: 301 QVSGVFQLQDTDVALEALAQALPLTIERRTRFWVRVAAAGKR 342 >gi|300313764|ref|YP_003777856.1| Fe2+-dicitrate sensor membrane protein [Herbaspirillum seropedicae SmR1] Length = 326 Score = 159 bits (403), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 122/332 (36%), Positives = 170/332 (51%), Gaps = 30/332 (9%) Query: 17 VLDQAIAWLVKLRADAGRTAPDAVLQARIDAWRLADARHEAVWSELMAAEAQFQRLVALP 76 +L +A WL+++ DA ++++ WR HE WS + F L Sbjct: 15 ILTEAATWLMEMHEGPL----DAARRSKLAQWRQRSPEHERAWSRAALLQETFAAL---- 66 Query: 77 VPPEQWQQPLSELTRTRTRRQARRRWLGGVTLGLGG-LALGALAARQAGLWEGLDGQRYA 135 P L ++ RR+A + +TLG G LA AL+ + G R A Sbjct: 67 --PPGGATALKQVGPA-GRRKAIKLLAYALTLGPAGWLAYHALSGPE-------QGARIA 116 Query: 136 TATGQHRRLALGDGTQLTLDTDTSVQLRFDGRQRLLVLQQGDIFIDTGKDALAAQHRPFL 195 TA G+ R + L DG++L L+TDT + L F QRLL LQ+G+I + T D RPFL Sbjct: 117 TAIGERREVQLDDGSRLWLNTDTRITLDFTPAQRLLRLQRGEIMVLTAPDR-QQPPRPFL 175 Query: 196 VQTAQARLQALGTRFDVRQQQGSTRLTVLEGRVATGQEPRTVIEPGETVDIDAQGHLRRQ 255 V T Q L+ LGTRF VR++ + + VL+G V T + + + R Sbjct: 176 VATRQGSLRPLGTRFTVRERDQAVEVAVLQGAVEI-----TPASSAQQTVLPSGMQTRFT 230 Query: 256 AAGSAAMDPT-----AWLEGSLVARQMRLAEVLAEIARYRHGWLQCDAAVAQLRVSGVFQ 310 +GSAA P AW G L+A +M LA+ + E+ RYR G LQ D A+A L VSGVF Sbjct: 231 RSGSAAPRPCDDTQAAWSRGLLIAERMPLAQFIGELGRYRSGLLQADPAIAGLEVSGVFP 290 Query: 311 LQDSDAALESLAQALPVAIERRTRFWVRVVPA 342 L D+D L LAQ LPV +++ TR+WVRV+PA Sbjct: 291 LADTDRVLRLLAQTLPVRVQQLTRYWVRVLPA 322 >gi|300309380|ref|YP_003773472.1| Fe2+-dicitrate sensor membrane protein [Herbaspirillum seropedicae SmR1] Length = 336 Score = 147 bits (370), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 130/344 (37%), Positives = 177/344 (51%), Gaps = 29/344 (8%) Query: 1 MAARPSPQPPAAAAD---PVLDQAIAWLVKLRADAGRTAPDAVLQARIDAWRLADARHEA 57 MA QP A AAD V ++A+ WL++L+ AP + L+A +AWR A HE Sbjct: 1 MAHSSWYQPTADAADVPPQVAERALEWLLELQTQP--LAP-STLEA-WEAWRSAHPDHER 56 Query: 58 VWSELMAAEAQFQRLVALPVPPEQWQQPLSELTRTRTRRQARRRWLGGVTLGLGGLALGA 117 W + + + Q L A PV Q + LT + RRQ + L + G GG+A G Sbjct: 57 AWRRIESVRGRLQAL-ASPVNAALAQ---AALTPSGNRRQVIKT-LALLVFG-GGVAWGL 110 Query: 118 LAARQAGLWEGLDGQRYATATGQHRRLALGDGTQLTLDTDTSVQLRFDGRQRLLVLQQGD 177 + W T GQ RRL L DG+QL L+T ++V L F +R L L G+ Sbjct: 111 TRSEPWQQWRA----DLRTDIGQQRRLVLEDGSQLVLNTHSAVNLAFSAEERRLRLISGE 166 Query: 178 IFIDTGKDALAAQHRPFLVQTAQARLQALGTRFDVRQQQGSTRLTVLEGRV-----ATGQ 232 + + TGK A RPFLV+TAQ ALGTR+ VRQ+ G T ++V EG V Q Sbjct: 167 LLVTTGK---AGGGRPFLVETAQGLAYALGTRYAVRQRAGRTEVSVWEGAVRLVPRQAAQ 223 Query: 233 EPRTVIEPGETVDIDAQGHLRRQAAGSAAMDPTAWLEGSLVARQMRLAEVLAEIARYRHG 292 + R V++ G+ AQG A M AW +G +VAR MRL LAE+ RY Sbjct: 224 QAR-VLQAGQQAAFSAQGVGDVTTADETRM---AWTDGVIVARGMRLDAFLAELGRYTTD 279 Query: 293 WLQCDAAVAQLRVSGVFQLQDSDAALESLAQALPVAIERRTRFW 336 L C AV+ +R+SG + + DSDA + +LA AL + + R RFW Sbjct: 280 RLSCAPAVSGVRISGSYPVADSDAVIATLAAALGLQAQLRQRFW 323 >gi|300312829|ref|YP_003776921.1| Fe2+-dicitrate sensor membrane protein [Herbaspirillum seropedicae SmR1] Length = 316 Score = 102 bits (254), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 98/334 (29%), Positives = 154/334 (46%), Gaps = 35/334 (10%) Query: 15 DPVLDQAIAWLVKLRADAGRTAPDAVLQARIDAWRLADARHEAVWSELMAAEAQFQRLVA 74 + +++QAI W+++L + G P +A + W+ AD RH ++ L + QF Sbjct: 5 EKIVEQAIEWMLQL--EQGDLPPGE--RAAFEQWKAADPRHAMAYANLSQSVQQFD---- 56 Query: 75 LPVPPEQWQQPLSELTRTRTRRQARRRWLGGVTLGLGGLALGALAARQAGLWEGLDGQRY 134 VP + P+ L T ++ RR+ L + G A + L + Sbjct: 57 --VPRQVGAAPVI-LRNTLQQKSKRRKALKRIAALAGLAVGAAALLDRVTPVAALTADLH 113 Query: 135 ATATGQHRRLALGDGTQLTLDTDTSVQLRFDGRQRLLVLQQGDIFIDTGKDALAAQHRPF 194 T TGQ +R L DG+ +TL+ +++ R + L +G+I + AA PF Sbjct: 114 -TGTGQRQRTTLADGSIITLNARSAIDHLISPVLRQVRLLEGEIQVQIA----AANALPF 168 Query: 195 LVQTAQARLQAL-GT--------RFDVRQQQGSTRLTVLEGRVATGQEPRTVIEPGETVD 245 ++T + A GT R D+ QQ + L+ G+ AT + G+ Sbjct: 169 SIETVHGSVSATAGTLMLGLQPLRTDLVAQQAAALLSTRNGQHAT-------LAAGQRTW 221 Query: 246 IDAQGHLRRQAAGSAAMDPTAWLEGSLVARQMRLAEVLAEIARYRHGWLQCDAAVAQLRV 305 D +AAG A +W+EG A L EV+A + YR G L+ D AVAQLR+ Sbjct: 222 FDQDEIGAPRAAGGAE---NSWVEGYYTASDNSLEEVVAALRPYRKGLLRLDPAVAQLRI 278 Query: 306 SGVFQLQDSDAALESLAQALPVAIERRTRFWVRV 339 SG F L D+D AL +LA ALP+ + R + +WV + Sbjct: 279 SGAFPLDDTDRALSALASALPITVNRVSPYWVSI 312 >gi|300313795|ref|YP_003777887.1| transmembrane sensor protein [Herbaspirillum seropedicae SmR1] Length = 342 Score = 89.4 bits (220), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 72/216 (33%), Positives = 112/216 (51%), Gaps = 20/216 (9%) Query: 125 LWEGLDGQ--RYA-----TATGQHRRLALGDGTQLTLDTDTSVQLRFDGRQRLLVLQQGD 177 LW GL RY TATG L DG++L L ++ FD ++R + L QG+ Sbjct: 113 LWLGLQAYPARYLLADMRTATGHWDARTLADGSRLLLSGSSAANFHFDAQRRTVELVQGE 172 Query: 178 IFIDTGKDALAAQHRPFLVQTAQARLQALGTRFDVRQQQGSTRLTVLEGRVA------TG 231 + ++ +D RPF++QTA ++ALGTRF VR+ + T +++LE +V+ T Sbjct: 173 LLVEVARDPA----RPFVIQTADGSIRALGTRFLVRRDRAGTLVSMLESKVSIQPGADTT 228 Query: 232 QEPRTVIEPGETVDIDAQGHLRRQAAGSAAMDPTAWLEGSLVARQMRLAEVLAEIARYRH 291 Q P V+E G+ V + + +AA++ AW LV+ L EVL E+ R+R Sbjct: 229 QAP-LVLEAGQRVRLHGGAAGPLEHIDAAALE-RAWRRHQLVSNARPLTEVLDELNRHRP 286 Query: 292 GWLQCD-AAVAQLRVSGVFQLQDSDAALESLAQALP 326 G + D A +A L ++ V L D+ AL+ L +P Sbjct: 287 GRILYDQAQLAGLHMTVVLPLDDTQRALQLLVDGVP 322 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.133 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 896,976 Number of extensions: 32214 Number of successful extensions: 167 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 6 Length of query: 347 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 261 Effective length of database: 1,212,660 Effective search space: 316504260 Effective search space used: 316504260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)