BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2191.p
         (298 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310815|ref|YP_003774907.1| alpha/beta hydrolase superfamil...    58   1e-09

>gi|300310815|ref|YP_003774907.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 270

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 72/163 (44%), Gaps = 24/163 (14%)

Query: 11  ALHHKLIDVDGIRLHYVEAGTGAPVLLIPGWPQSWFAWRDVIPRLARAGRRVIAIDPRGM 70
           A+  + +      LH   AG G PVLL+   P+SW  +RDV+P L +   R +A+D  G 
Sbjct: 7   AIRRQFVATSAGPLHLASAGEGFPVLLLHQTPRSWDEFRDVLPLLGQR-YRALALDTAGF 65

Query: 71  GDSAHPQDGFTPGIVAAEIHRFAQLT----GLLEAGKLDVAGHDVGAWIAYAYAADWPED 126
           GDS        P +    I R+AQL       LE GK  V GH  GA  A   AA  P+ 
Sbjct: 66  GDSCR------PALHEHSIERWAQLAVEVMDQLEIGKAAVVGHHTGAVTAMEIAAAAPDR 119

Query: 127 VRTLSLLDAALPGISPLPTTEIPTDEINKRTWHFSFNRLPDLP 169
           V  L L             +  P ++  +RT H     + D+P
Sbjct: 120 VAALVL-------------SSCPFNDAARRTAHAGKRTIDDVP 149


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,033,123
Number of extensions: 47277
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 2
Length of query: 298
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 213
Effective length of database: 1,217,395
Effective search space: 259305135
Effective search space used: 259305135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)