BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2188.p (451 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311751|ref|YP_003775843.1| signal transduction histidine k... 480 e-136 gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 177 2e-45 gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine ... 168 8e-43 gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase tra... 165 7e-42 gi|300313819|ref|YP_003777911.1| two component sensor histidine ... 161 1e-40 >gi|300311751|ref|YP_003775843.1| signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 446 Score = 480 bits (1235), Expect = e-136, Method: Compositional matrix adjust. Identities = 273/449 (60%), Positives = 333/449 (74%), Gaps = 13/449 (2%) Query: 1 MRRSLQARLSLALTLAILLVAVGAGGFGFISAYRESIRVQDDLLMQVGALLARVGGSLPA 60 M+RSLQA+LSLALT AIL+VA+GAGGFGF++AYR+SIR QDDLLMQVGALL G +L Sbjct: 8 MKRSLQAQLSLALTAAILVVALGAGGFGFVTAYRDSIRSQDDLLMQVGALLKHSGAALSL 67 Query: 61 EGAVGSYPGNDHESRISVQWLPGP-DTDADTVGVKDELPLPAGLKDGFQTVFMVHEDFRV 119 EGA + G++H+SR++VQWLP P D AD LPLPA L +GF T+ + HE FRV Sbjct: 68 EGAGMAAAGDEHDSRVTVQWLPDPGDPPADAA----PLPLPADLAEGFHTLLLHHEYFRV 123 Query: 120 YVQPLPSGRRIVLAQETDARNSIAYQSAWRALLPVLILVPVLLLALRRIVRKLFAPLSSL 179 YVQ LP+G+R+ LAQETD R IA +SAWRAL P ++L P+LLLA++RI+++LFAPL +L Sbjct: 124 YVQALPNGKRLALAQETDLRQHIAQRSAWRALWPFVVLAPLLLLAVQRIIKRLFAPLQAL 183 Query: 180 RQEIDQRRDDQLAPIATAALPTEIAPFVEAINRLLTRVQNAMTTQRRFVADAAHELRTPL 239 RQEID R +D L PIA LP E+ FV AIN LL RV+ M QRRFVADAAHELRTPL Sbjct: 184 RQEIDSRGEDDLQPIAERLLPREVQAFVAAINGLLARVEAGMAAQRRFVADAAHELRTPL 243 Query: 240 TALSLQAERLQQSELSDTARERLQRLSSGIERSKALVTQLLALARTQSQGMTEPVARSRF 299 TALSLQAERL ++ +S+TARERL RL +G++R++ LVTQLLALAR Q+ A Sbjct: 244 TALSLQAERLGRAPMSETARERLTRLETGLQRARQLVTQLLALARAQTPA---GAALQPC 300 Query: 300 ALREAVRPVLEDLLPLAQHKDIDLGVDSSLDAEVDTSLADLQLLLSNLIDNAIRYTPAGG 359 +L + +R V+E+LLPLAQ K IDLG+D DA V T +L LL NLIDNAI YTPAGG Sbjct: 301 SLHQVLREVIEELLPLAQCKQIDLGLDGERDACVLTQPQELAQLLRNLIDNAIAYTPAGG 360 Query: 360 CISLALVTGAQVRPGMARLELTDNGPGIPAAERERVFEPFYRLDPSAAPGSGLGLAIAQS 419 +SL + AQ LE+ D GPGI A+ERERVF+PFYR+DPS GSGLGLAI QS Sbjct: 361 AVSLRMERHAQ----WVALEICDTGPGIAASERERVFQPFYRIDPSGQ-GSGLGLAIVQS 415 Query: 420 LAQRLGITIGLEMADPVAQRGLRVVLDIP 448 +A+RLG+T+ LE ADP Q GLRV L IP Sbjct: 416 IARRLGVTLRLEAADPAQQSGLRVRLLIP 444 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 177 bits (449), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 120/318 (37%), Positives = 180/318 (56%), Gaps = 18/318 (5%) Query: 130 IVLAQETDARNSIAYQSAWRALLPVLILVPVLLLALRRIVRKLFAPLSSLRQEIDQRRDD 189 + + + + R +A + +LP I++PV L + + + +PLS L+Q I RR D Sbjct: 55 VQVGETLEKRAQLANEIIKGVILPQFIILPVALALVWFALSRGLSPLSELQQRIRARRPD 114 Query: 190 QLAPIATAALPTEIAPFVEAINRLLTRVQNAMTTQRRFVADAAHELRTPLTALSLQAE-R 248 L+PI + +P EI+P V ++N +L R+ + Q+RF+ADAAH+++TPL + +Q+E Sbjct: 115 DLSPIDSGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELA 174 Query: 249 LQQSELSDTARERLQRLSSGIERSKALVTQLLALARTQSQ----GMTEPVARSRFALREA 304 L+Q + D R L++L+ E + LV QLL+LAR ++Q G PV L E Sbjct: 175 LRQDDQVDV-RRSLEQLAKSSETATRLVNQLLSLARAENQQSQSGGMIPV-----ELNEL 228 Query: 305 VRPVLEDLLPLAQHKDIDLGVDSSLDAEVDT-SLADLQLLLSNLIDNAIRYTPAGGCISL 363 R V++D +P++ + IDLG + + T + L+ LLSNL+DNA+ YTP G + Sbjct: 229 ARSVVQDWVPMSFTQRIDLGFEQPDHPILITGNPVMLRELLSNLLDNALHYTPHDGNGRV 288 Query: 364 ALVTGAQVRPGMARLELTDNGPGIPAAERERVFEPFYRL--DPSAAPGSGLGLAIAQSLA 421 + G+A LE+ DNGPGIP AER VFE FYR+ PS G GLGLAI + +A Sbjct: 289 TVRARTDEGGGLAILEVEDNGPGIPVAERANVFERFYRILGTPSTGSGLGLGLAIVREIA 348 Query: 422 QR----LGITIGLEMADP 435 Q+ L IT DP Sbjct: 349 QQHEAALEITSNPRSTDP 366 >gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 444 Score = 168 bits (425), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 124/327 (37%), Positives = 181/327 (55%), Gaps = 19/327 (5%) Query: 106 GFQTVFMVHEDFRVYVQPLPSGRRIVLAQETDARNSIAYQSAWRALLPVLILVPVLLLAL 165 GF V + +RVY + S + +AQ AR+ IA Q A + ++P+L+L P++ + Sbjct: 99 GFANVSGPNGMWRVYSAQIGS-TVVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLS 157 Query: 166 RRIVRKLFAPLSSLRQEIDQRRDDQLAPIATAALPTEIAPFVEAINRLLTRVQNAMTTQR 225 V + AP+ E+ R + L P+A +P EI P A+N LL R+++A TQR Sbjct: 158 WVAVSRGLAPVRKAAAEVAARDMNSLQPLADVGMPQEIQPLTHALNDLLARLKHATETQR 217 Query: 226 RFVADAAHELRTPLTALSLQAERLQQSELSDTARERLQRLSSGIERSKALVTQLLALART 285 FVADAAHELRTPLTAL LQ + +++ + R L +G+ER+ LV QLL LAR Sbjct: 218 AFVADAAHELRTPLTALRLQTQLAERAVDEEERRAAFADLKNGLERTTHLVHQLLTLARQ 277 Query: 286 QSQGMTEPVARSRFALREAVRPVLEDLLPLAQHKDIDLGVDSSLDA----EVDTSLADLQ 341 + M+ ++ LR + V+ DL +A+H IDLG+ D V + L+ Sbjct: 278 EPDAMS----FTQVDLRALLGSVVGDLSSVAEHGGIDLGLSDQGDDGRPLRVTGNADALR 333 Query: 342 LLLSNLIDNAIRYTPAGGCISLALVTGAQVRPGMARLELTDNGPGIPAAERERVFEPFYR 401 +L +NL+DNA+RYTPAGG + + + G + + D+GPGI +E RVF+ FYR Sbjct: 334 ILFNNLVDNALRYTPAGGVVDVGVDLST---AGYCTVVVQDSGPGIAESELPRVFDRFYR 390 Query: 402 LDPS-------AAPGSGLGLAIAQSLA 421 S AA GSGLGLAI + +A Sbjct: 391 AQHSQEGSGSRAAFGSGLGLAIVRQIA 417 >gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 165 bits (417), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 122/308 (39%), Positives = 172/308 (55%), Gaps = 17/308 (5%) Query: 148 WRALLPVLILVPVLLLALRRIVRKL---FAPLSSLRQEIDQRRDDQLAPIATAALPTEIA 204 W A L I++ LLLA+ +V L PL +L+ E+ RR D L P+ L E+ Sbjct: 160 WHASLRRQIVL--LLLAISLVVLGLTMELRPLLALKDELATRRPDSLTPLRAGGLQQELR 217 Query: 205 PFVEAINRLLTRVQNAMTTQRRFVADAAHELRTPLTALSLQAERLQQSELSDTAR--ERL 262 P VEAIN+ + R+ +T Q+RFVADAAH+LRTPL + Q + +Q L D AR + L Sbjct: 218 PIVEAINQYIFRLNAQVTVQKRFVADAAHQLRTPLAVIDSQIQFARQ--LDDPARVAQVL 275 Query: 263 QRLSSGIERSKALVTQLLALARTQSQGMTEPVARSRFALREAVRPVLEDLLPLAQHKDID 322 L G L +LL L++ ++ + R+ L VLE+L LA K ID Sbjct: 276 ASLQEGSRSMTDLTNKLLLLSQAEASD-SSAFPRAPVDLLAVSAMVLEELSGLALKKGID 334 Query: 323 LGVDSSLD-AEVDTSLADLQLLLSNLIDNAIRYTPAGGCISLALVTGAQVRPGMARLELT 381 LG++++L+ A V+ + A L +L NLIDNA+RYTP GG +++ G + + + ++ Sbjct: 335 LGLETTLESAMVNGNEAQLMGMLMNLIDNALRYTPEGGKVTV----GLEKKRSQMIITVS 390 Query: 382 DNGPGIPAAERERVFEPFYRLDPSAAPGSGLGLAIAQSLAQRLGITIGLEMADPVAQRGL 441 DNGPGIPA RERVFE FYR PGSGLGLAI + + Q +I L+ P GL Sbjct: 391 DNGPGIPAEVRERVFERFYRNAAPDQPGSGLGLAIVREIVQASQGSIRLDA--PAQGSGL 448 Query: 442 RVVLDIPA 449 + +PA Sbjct: 449 VATVSLPA 456 >gi|300313819|ref|YP_003777911.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 485 Score = 161 bits (407), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 116/322 (36%), Positives = 181/322 (56%), Gaps = 37/322 (11%) Query: 130 IVLAQETDARN----SIAYQSAWRALLPVLILVPVLLLALRRIVRKLFAPLSSLRQEIDQ 185 I + + + RN I + + WR V + ++ A+R ++R PL L+ E++ Sbjct: 155 IQVGETMEGRNGMTRKILFDTLWRQGTLVTVAALLVWFAVRFVLR----PLMQLKGEVES 210 Query: 186 RRDDQLAPIATAALPTEIAPFVEAINRLLTRVQNAMTTQRRFVADAAHELRTPLTALSLQ 245 R L+ TA + E+ P V+A+N + R+Q ++ QRRF+ADA+H+LRTPLT L Q Sbjct: 211 RAPTDLSGFDTALVHKEMRPLVQAMNGYMGRLQALISAQRRFIADASHQLRTPLTVLKTQ 270 Query: 246 AE---RLQQSELSDTA--RERLQRLSSGIERSKALVTQLLALARTQ---SQGMTEPVARS 297 +E R + E D A R+ ++ ++ + + L +LL LAR + ++G T P Sbjct: 271 SELTLRELRREQVDAAELRDLVEGMARTTDAAVHLANRLLTLARAEHGAAEGGTMP---- 326 Query: 298 RFALREAVRPVLEDLLPLAQHKDIDLGVDSSLDAEVDTSLADLQLLLSNLIDNAIRYTPA 357 +L +A R V +L A ++I L + D ++ + L L+ NL+DNAIRYTPA Sbjct: 327 -LSLSDAARQVALELSQQAVSREIGLAFEEEGDVSIEANALLLHELMVNLLDNAIRYTPA 385 Query: 358 GGCISLALVTGAQVRPG---MARLELTDNGPGIPAAERERVFEPFYR------LDPSAAP 408 GG ++L + AQ PG +A LE+ D+GPGIPAAERE+VFEPFYR ++P Sbjct: 386 GGHVTLRV--RAQSSPGQPTVALLEVEDSGPGIPAAEREKVFEPFYRAGATQHVNPG--- 440 Query: 409 GSGLGLAIAQSLA--QRLGITI 428 G+GLGL+I + +A R +T+ Sbjct: 441 GTGLGLSIVREIAAMHRASVTL 462 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,243,088 Number of extensions: 52413 Number of successful extensions: 341 Number of sequences better than 1.0e-08: 39 Number of HSP's gapped: 264 Number of HSP's successfully gapped: 39 Length of query: 451 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 363 Effective length of database: 1,203,190 Effective search space: 436757970 Effective search space used: 436757970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)