BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2187.p
         (188 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311752|ref|YP_003775844.1| cytochrome b561 protein [Herbas...   292   9e-81
gi|300310020|ref|YP_003774112.1| cytochrome b561 protein [Herbas...    84   7e-18

>gi|300311752|ref|YP_003775844.1| cytochrome b561 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  292 bits (748), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 154/174 (88%), Positives = 163/174 (93%)

Query: 11  PTRYHPYSVILHWVMFLLFVVALATIEYREDIPKGDPLRDLLRTVHMHAGQLVLILVILR 70
           P+RYHP SVILHWV+FLLFVVALATIEYR+DIPKGDPLRDLLRTVHMHAGQLVLILV+LR
Sbjct: 12  PSRYHPLSVILHWVIFLLFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLILVVLR 71

Query: 71  LIARKMLGVPPELPMPKLQRLGAHAVHLLLYVVMIGLPLTGILFTQAGGRDVVFFGMTLP 130
           L+ARK  GVPPEL +P++QR GA AVHLLLY VMIGLP+TGILFTQAGGRDVVFFGMTLP
Sbjct: 72  LLARKAFGVPPELALPRVQRWGAAAVHLLLYAVMIGLPVTGILFTQAGGRDVVFFGMTLP 131

Query: 131 VILAKDMALRGPIKEVHELMGNAVYFLVGLHVLGALWHQLFDRMPILQRMSLRS 184
           VILAKDMALRGPIKE HE MGNAVYFLVGLHVLGALWHQ FDRMPILQRMSLR 
Sbjct: 132 VILAKDMALRGPIKEFHEFMGNAVYFLVGLHVLGALWHQFFDRMPILQRMSLRG 185


>gi|300310020|ref|YP_003774112.1| cytochrome b561 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 174

 Score = 84.0 bits (206), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 89/171 (52%), Gaps = 4/171 (2%)

Query: 13  RYHPYSVILHWVMFLLFVVALATIEYREDIPKGDPLRDLLRTVHMHAGQLVLILVILRLI 72
           RY   +++LHW++ LL + A        DIP   P +    + H   G  VL L   RL+
Sbjct: 3   RYTKPAMLLHWLIALLIISAFGLGLTMVDIPGLTPTKLKYFSWHKWLGVTVLALACARLL 62

Query: 73  ARKMLGVPPELP--MPKLQRLGAHAVHLLLYVVMIGLPLTGILFTQAGGRDVVFFG-MTL 129
            R +    P  P  MP+ Q+  AH +HL LY +M  +P++G  ++ A G  VV+ G + L
Sbjct: 63  WR-LTHRAPAYPAHMPQWQQSAAHGLHLGLYALMFAIPVSGYFYSLAAGVPVVYLGVLPL 121

Query: 130 PVILAKDMALRGPIKEVHELMGNAVYFLVGLHVLGALWHQLFDRMPILQRM 180
           PV++A +  L+  +KE H  +   +     LHVL AL HQ  DR  I +R+
Sbjct: 122 PVLMAPNPELKPLLKETHYWLNMILLGAFALHVLAALKHQFIDRDNIFKRI 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.147    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 624,219
Number of extensions: 26079
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 3
Length of query: 188
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,241,070
Effective search space: 134035560
Effective search space used: 134035560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)