BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2186.p (473 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 127 2e-30 gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine ... 124 1e-29 gi|300309362|ref|YP_003773454.1| transmembrane sensory transduct... 123 3e-29 gi|300312357|ref|YP_003776449.1| cobalt/zinc/cadmium resistance ... 115 1e-26 gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 114 2e-26 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 133/246 (54%), Gaps = 10/246 (4%) Query: 220 EIGHLVDTLNSMLARLERAFELQRNFTANAAHEIRSPLSRLRTEIELALRRPRSAEDYVA 279 E+ L+ +N ++AR+ + + Q+NF A+ AH++R+PL+ L+ ++EL + + D Sbjct: 215 ELQPLIVAMNELMARINKGEQAQQNFMADVAHQLRTPLTGLKLQLELLHDKHQDQPDTAR 274 Query: 280 TLQSCLDEVGALTSMVEELLQLARLDAGQ-EGRSMECIGLDSLVREALARWQGVAEARRI 338 +L V + +LL LAR + G E R +E + LD LV E++ + A+ +RI Sbjct: 275 SLAMMNSSVERMIRQSRQLLALARSEPGLFESRKLEELSLDKLVEESVQHFIEEADKKRI 334 Query: 339 RLVLQAPQAVQARI-GERAAML-VLNNLLDNAIKFSPPDTAIEVSVSSDASGATLVVADR 396 L A R+ G+R + +++NL+DNA+++SPP + V + L V D Sbjct: 335 DLGFDLRPA---RLRGDRFLLSDLIDNLIDNAVRYSPPHGTVTVRCLEEQDATVLSVEDS 391 Query: 397 GPGVAATDMGLLFERFYRGRASQVQQTSGAGLGLSIVRAVLEGYGASISLGNRSDGAGAE 456 GPG+A L+F+RFYR + +G+GLGL+IVR + +G IS+ + G G Sbjct: 392 GPGIAPEHRELIFDRFYRAN----DKVAGSGLGLAIVREIAHDHGGVISVDCKEQGQGTI 447 Query: 457 CRLHFP 462 + FP Sbjct: 448 FTVRFP 453 >gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 444 Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 96/267 (35%), Positives = 142/267 (53%), Gaps = 14/267 (5%) Query: 205 DANLGERLADPDSDDEIGHLVDTLNSMLARLERAFELQRNFTANAAHEIRSPLSRLRTEI 264 D N + LAD EI L LN +LARL+ A E QR F A+AAHE+R+PL+ LR + Sbjct: 179 DMNSLQPLADVGMPQEIQPLTHALNDLLARLKHATETQRAFVADAAHELRTPLTALRLQT 238 Query: 265 ELALRRPRSAEDYVATLQSCLDEVGALTSMVEELLQLARLDAGQEGRSMECIGLDSLVRE 324 +LA R E+ A + + T +V +LL LAR + + S + L +L+ Sbjct: 239 QLA-ERAVDEEERRAAFADLKNGLERTTHLVHQLLTLARQEP--DAMSFTQVDLRALLGS 295 Query: 325 ALARWQGVAEARRIRLVL--QAPQAVQARIGERAAML--VLNNLLDNAIKFSPPDTAIEV 380 + VAE I L L Q R+ A L + NNL+DNA++++P ++V Sbjct: 296 VVGDLSSVAEHGGIDLGLSDQGDDGRPLRVTGNADALRILFNNLVDNALRYTPAGGVVDV 355 Query: 381 SVS-SDASGATLVVADRGPGVAATDMGLLFERFYRGRASQVQQTS----GAGLGLSIVRA 435 V S A T+VV D GPG+A +++ +F+RFYR + SQ S G+GLGL+IVR Sbjct: 356 GVDLSTAGYCTVVVQDSGPGIAESELPRVFDRFYRAQHSQEGSGSRAAFGSGLGLAIVRQ 415 Query: 436 VLEGYGASISLGNRSDGAGAECRLHFP 462 + + + + L R+ G G + R+ FP Sbjct: 416 IADLHRVPVEL--RNTGHGLQARVVFP 440 >gi|300309362|ref|YP_003773454.1| transmembrane sensory transduction histidine kinase for cobalt/zinc/ cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 467 Score = 123 bits (309), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 148/269 (55%), Gaps = 7/269 (2%) Query: 196 IAAQARRISDANLGERLADPDSDDEIGHLVDTLNSMLARLERAFELQRNFTANAAHEIRS 255 +AAQ R +S L RL + E+ +V++ N ML RL R+F+ F+A+ AH++R+ Sbjct: 199 MAAQTRAVSANRLDTRLDLQAAPRELHEIVESFNEMLDRLHRSFQQLSQFSADLAHDVRT 258 Query: 256 PLSRLRTEIELALRRPRSAEDYVATLQSCLDEVGALTSMVEELLQLARLDAGQEGRSMEC 315 PL+ L + ++AL +PR ++Y A L S ++E L+ M+E +L LAR + + Sbjct: 259 PLNNLMVQTQVALGKPRGIDEYQALLSSNIEEYERLSRMMESMLFLARAENAHVVLQWQE 318 Query: 316 IGLDSLVREALARWQGVAEARRIRLVLQAPQAVQARIGERAAML--VLNNLLDNAIKFSP 373 + + + ++G+A+ ++RLV+Q +QA A +L + NL+ NAI+++P Sbjct: 319 LDVAQELTRIADYFEGIADEAQVRLVVQGAGRLQA----DATLLRRAVGNLVANAIRYTP 374 Query: 374 PDTAIEVSVSSDASGATLVVADRGPGVAATDMGLLFERFYRGRASQVQQTSGAGLGLSIV 433 D I + V + G + V++ G G+ A + LF+RFYR S+ +GLGL+IV Sbjct: 375 ADGVIRLQVDAAGDGMEISVSNPGAGIPAEQLERLFDRFYRADPSRSSAGGSSGLGLAIV 434 Query: 434 RAVLEGYGASISLGNRSDGAGAECRLHFP 462 R+++ +G S+ + S G L FP Sbjct: 435 RSIMMLHGGQASVTS-SPGQLTVFSLRFP 462 >gi|300312357|ref|YP_003776449.1| cobalt/zinc/cadmium resistance two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/270 (29%), Positives = 144/270 (53%), Gaps = 3/270 (1%) Query: 196 IAAQARRISDANLGERLADPDSDDEIGHLVDTLNSMLARLERAFELQRNFTANAAHEIRS 255 ++ +A +I+ +L RL E+ + + N+ML RLE + F+ + AHEIR+ Sbjct: 205 MSQRAAQITPDHLSARLDQEGMPAELRRVALSFNAMLDRLEAGYAHLAQFSGDLAHEIRT 264 Query: 256 PLSRLRTEIELALRRPRSAEDYVATLQSCLDEVGALTSMVEELLQLARLDAGQEGRSMEC 315 P++ L + ++AL + RS E+Y L+S ++E+ L+ +VE +L LA+ D Sbjct: 265 PINVLMGQSQVALGQRRSPEEYEQVLESNVEELQRLSRIVENILFLAQADHAALAVERNA 324 Query: 316 IGLDSLVREALARWQGVAEARRIRLVLQAPQAVQARIGERAAMLVLNNLLDNAIKFSPPD 375 + L + ++G+A+ R +R +QA QA + V++NL+ NA+++ + Sbjct: 325 LDLAEELGRITDYFEGIADERGMRFDVQAAGQCQANL--IMWRRVVSNLVINAVRYGRAE 382 Query: 376 TAIEVSVSSDASGATLVVADRGPGVAATDMGLLFERFYRGRASQVQQTSGAGLGLSIVRA 435 + I + SD G+ ++V +R V A M +F+RFYRG S+ T GLGL+IV+A Sbjct: 383 STIRILAESDGEGSRIMVENRSEDVTAQAMARMFDRFYRGDRSRSAFTESNGLGLAIVKA 442 Query: 436 VLEGYGASISLGNRSDGAGAECRLHFPTVA 465 ++ +G + ++ + G L FP+ A Sbjct: 443 IMALHGGTAAVECPAPG-WIRFSLRFPSAA 471 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 129/237 (54%), Gaps = 14/237 (5%) Query: 219 DEIGHLVDTLNSMLARLERAFELQRNFTANAAHEIRSPLSRLRTEIELALRRPRSAEDYV 278 +EI LV +LN MLARL + +Q+ F A+AAH++++PL+ +R + ELALR+ D Sbjct: 126 EEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALRQDDQV-DVR 184 Query: 279 ATLQSCLDEVGALTSMVEELLQLARLDAGQ-EGRSMECIGLDSLVREALARWQGVAEARR 337 +L+ T +V +LL LAR + Q + M + L+ L R + W ++ +R Sbjct: 185 RSLEQLAKSSETATRLVNQLLSLARAENQQSQSGGMIPVELNELARSVVQDWVPMSFTQR 244 Query: 338 IRLVLQAPQAVQARIGERAAML--VLNNLLDNAIKFSPPDTAIEVSV--SSDASG--ATL 391 I L + P G ML +L+NLLDNA+ ++P D V+V +D G A L Sbjct: 245 IDLGFEQPDHPILITGN-PVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGGGLAIL 303 Query: 392 VVADRGPGVAATDMGLLFERFYR--GRASQVQQTSGAGLGLSIVRAVLEGYGASISL 446 V D GPG+ + +FERFYR G S SG GLGL+IVR + + + A++ + Sbjct: 304 EVEDNGPGIPVAERANVFERFYRILGTPS---TGSGLGLGLAIVREIAQQHEAALEI 357 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,312,189 Number of extensions: 51658 Number of successful extensions: 328 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 280 Number of HSP's successfully gapped: 34 Length of query: 473 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 384 Effective length of database: 1,198,455 Effective search space: 460206720 Effective search space used: 460206720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)