BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2183.p (1034 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313716|ref|YP_003777808.1| cobalt-zinc-cadmium resistance ... 671 0.0 gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 268 1e-72 gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump tr... 243 8e-65 gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 230 6e-61 gi|300313900|ref|YP_003777992.1| cation/multidrug efflux pump pr... 228 2e-60 >gi|300313716|ref|YP_003777808.1| cobalt-zinc-cadmium resistance cation efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1073 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/1035 (37%), Positives = 604/1035 (58%), Gaps = 46/1035 (4%) Query: 1 MIERLVSLCFQRRGIVQLVFLLAALYGWYCWNQLPLEAYPDIADVTSQVVTQVNGLAAEE 60 M ER++ + R +V L L YG Y + +LP++A PDI +V Q+ T G + E Sbjct: 1 MFERIIRFAIEHRWLVLLAVLGMGAYGVYSYQKLPIDAVPDITNVQVQINTSAPGYSPLE 60 Query: 61 VEQQITIPLERQIMGTPGMHVMRSESTFGLSLITVVFNDGAEDYWSRQRLQERI--SAVS 118 EQ+I+ P+E + G P + +RS S +GLS +TV+F DG + Y++RQ + ERI + Sbjct: 61 AEQRISYPIETLMSGLPNLEQVRSLSRYGLSQVTVIFKDGTDIYFARQLVNERIQLARSQ 120 Query: 119 LPYGAQPGLDALTSPIGEIYRYTLQSKTRDLR----------ELSELQFWKVIPRLKQVP 168 LP G PG+ +++ +GEIY +T++S+ D R +L E+Q W + P+L+ VP Sbjct: 121 LPPGIDPGMGPISTGLGEIYLWTVESRD-DARKPDGTPYTATDLREIQDWVIKPQLRLVP 179 Query: 169 GVVDVSNFGGLTTQFMLELDPAKLIKYNTSLNQISQAISANNANAG-GSIMKRGEQGLVI 227 GV +++ GG ++++ KL Y +++ I +A+ NN+N G G I +RGEQ L I Sbjct: 180 GVTEINTIGGFAKEYLVAPSAEKLASYGMTMDTIIKALEKNNSNVGAGYIERRGEQYL-I 238 Query: 228 RGVGLIRSLDDLGNIVVSQKNGVPVLVKDLGRVVLGNQERHGVLGIDHQSDAIEGITLLL 287 R G + S+DD+GNIV++ GVP+ ++D+ V +G + R G ++ + + G +L Sbjct: 239 RAPGQVASIDDIGNIVLANVKGVPIRIRDVAEVEIGRELRTGA-ATENGREVVLGTVFML 297 Query: 288 KNENPSRVMDGVHAAVQDLNDHILPKDVKIVPYIDRSKLVEATVHTVGKTLVEGMLLVSL 347 EN +V V ++++N LPK V+ V DR+ LV+ + TV K LVEG LLV Sbjct: 298 IGENSRKVSQAVARKMEEINRS-LPKGVEAVTVYDRTVLVDKAIATVKKNLVEGALLVVA 356 Query: 348 VLFLFLGSPRAAAIVAITIPLSLLTAFILMHHFNIPANLLSLGAIDFGILVDGAIVLVES 407 VLF+FLG+ RAA I A+ IPL++L F M + ANLLSLGA+DFGI++DGA+V+VE+ Sbjct: 357 VLFVFLGNIRAAIITAMVIPLAMLFTFTGMVSNKVSANLLSLGALDFGIIIDGAVVIVEN 416 Query: 408 ILR-------------LREERPQGEISGEDVLRLMRQLARPIFFGMLVIIIAYLPLFAFQ 454 +R R ER +V ++ RP+ FG L+I+I YLP+FA Sbjct: 417 CVRRLAHAQAHHGRTLTRSER------FHEVFAAAKEARRPLIFGQLIIMIVYLPMFALT 470 Query: 455 RIEYKLFSPMAFAVGFALVGALLVALLLTPGLSWMAYRRPVKVFHNPVLVWLEPRYRKVL 514 +E K+F+PMAF V AL+GA+++++ P + V N +++W + Y +L Sbjct: 471 GVEGKMFTPMAFTVVAALIGAMILSVTFIPAAIALFIGEKVAEKENILMLWAKRLYEPML 530 Query: 515 DKLVGKSRFVLAATLLTLAAIGVLGATIGRDFLPYLDEGSIWLQVQLPPGISLDKASELA 574 ++ VL + GV+ + +G +F+P L+EG + +Q PG SL ++ E+ Sbjct: 531 KTIMENKPVVLTFAGALILVCGVVASRLGSEFVPSLNEGDMAIQALRIPGTSLSQSLEMQ 590 Query: 575 DRL-RAATHEFPEVEHIVTQVGRNDDGTDPFTPSHIECAVTLHPYSEW-KSGWTKQELIA 632 ++ + +FPEVE + + G + +DP P+ + + L P +W + +++EL+ Sbjct: 591 KQIEKTLKQKFPEVERVFARTGTAEVASDPMPPNISDGYIMLKPQEQWPEPKKSREELLE 650 Query: 633 HMSERYKKLAGIDVGFTQPMIDGVLDKLSGSHSDLAVKIFGNDFGEMRVLANAVQGVLQD 692 + + K+ G F+QP+ + +SG SD+AVK+FG+D + A+ + VL+ Sbjct: 651 AIQDEVAKIPGNSYEFSQPIQLRFNELISGVRSDVAVKVFGDDMKVLNDTASKISAVLEK 710 Query: 693 VPGAADVVIDQEPRLPQVRVNVDRAAAARLGINVSDIMALIQTGIGGSPVTQVFIEERSY 752 +PGA +V I+Q LP + V +DR AR G+NVSDI + T IGG +F +R + Sbjct: 711 IPGATEVKIEQTTGLPMLTVEIDREKTARYGLNVSDIQDTVATAIGGKEAGTMFQGDRRF 770 Query: 753 NVAAVFNDGARSTPEALGNLTLV------AANGAHVALSQVAHITMEDGETTITREMNRR 806 + D AR+ EA+ L + A ++V L +VA +T+ G I+RE +R Sbjct: 771 GIVVRLPDQARTDLEAIRRLPIALPPQEGATRVSYVPLGEVASLTIAPGPNQISREDGKR 830 Query: 807 HLTVRLNLRGRDLASFLDDAKARIAQQVHYDHSRYEIAWGGQFENQQRAQSRLALILPMA 866 + V N+RGRDL F+ +A+ ++ V Y WGGQFEN Q A RL +++P+A Sbjct: 831 RIVVSANVRGRDLGGFVAEAERQLQSAVKVPAG-YWTTWGGQFENLQSATQRLQIVIPVA 889 Query: 867 LAFMFVLLFAEFKNLRQPALILLCVPLATLGGLVALHLRDMTLNVSSAVGFIALFGVAVL 926 L +FVLLFA F N++ L+ +P A GG++AL +R + +++S+AVGFIAL GVAVL Sbjct: 890 LLMVFVLLFAMFSNVKDGLLVFTGIPFALTGGILALAMRGIPMSISAAVGFIALSGVAVL 949 Query: 927 NAIIMMSNLNRWVSQSGLPLREAVIGGALERMRPVLMTATVAALGLVPAAIAHGLGSDVQ 986 N ++M+S + R + + G L A+ GA+ R+RPVLMTA VA+LG VP A+A G G++VQ Sbjct: 950 NGLVMISFI-RSLREEGRTLDAAIHEGAMTRLRPVLMTALVASLGFVPMALATGTGAEVQ 1008 Query: 987 RPLATVVVGGLMSAT 1001 RPLATVV+GG++S+T Sbjct: 1009 RPLATVVIGGILSST 1023 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 268 bits (686), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 273/1045 (26%), Positives = 472/1045 (45%), Gaps = 64/1045 (6%) Query: 25 LYGWYCWNQLPLEAYPDIADVTSQVVTQVNGLAAEEVEQQITIPLERQIMGTPGMHVMRS 84 L G LP+ YP+IA T V G A+ ++ +T +E+++ G G+ + S Sbjct: 21 LAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDSVTSLIEQEMNGADGLQYIES 80 Query: 85 ES-TFGLSLITVVFND------GAEDYWSR-QRLQERISAVSLPYGAQPGLDALTSPIGE 136 +S G IT+ F+ A D +R +R++ R+ A G Q +T Sbjct: 81 QSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPAAVTQQGVQ-----VTKSRSN 135 Query: 137 IYRYTLQSKTR---DLRELSELQFWKVIPRLKQVPGVVDVSNFGGLTTQFM-LELDPAKL 192 + S T D L + V+ +K+VPGV FG T + M + +DP KL Sbjct: 136 FLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFG--TERAMRIWIDPNKL 193 Query: 193 IKYNTSLNQISQAISANNANAGGSIM----KRGEQGLVIRGV--GLIRSLDDLGNIVV-S 245 I N + ++ AI A NA G + G Q + V G + S + GNI++ + Sbjct: 194 IGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQLTSPEQFGNIILRA 253 Query: 246 QKNGVPVLVKDLGRVVLGNQERHGVLGIDHQSDAIEGITLLLKNENPSRVMDGVHAAVQD 305 NG V ++D+ RV +G Q +D + + G+ L N VH +++ Sbjct: 254 NANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLS-PTANALGTATAVHKKMEE 312 Query: 306 LNDHILPKDVK-IVPYIDRSKLVEATVHTVGKTLVEGMLLVSLVLFLFLGSPRAAAIVAI 364 L + P VK +PY D SK V+ ++ V KTL+E ++LV LV+FLFL + R I I Sbjct: 313 LAKY-FPTGVKYTIPY-DTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQNIRYTIIPTI 370 Query: 365 TIPLSLLTAFILMHHFNIPANLLSLGA--IDFGILVDGAIVLVESILRLREERPQGEISG 422 +P++LL F + F N+L++ + GILVD AIV+VE++ R+ E +G Sbjct: 371 VVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMSE--EGLSPA 428 Query: 423 EDVLRLMRQLARPIFFGMLVIIIAYLPLFAFQRIEYKLFSPMAFAVGFALVGALLVALLL 482 + + M Q++ + LV+I ++P+ F ++ + ++ ++V ++L+A L Sbjct: 429 DATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVFSVLMAFTL 488 Query: 483 TPGLSWMAYRRPVKVFHN----PVLVWLEPR-------YRKVLDKLVGKSRFVLAATLLT 531 TP L +PV+ H+ W + Y+ ++ ++ K+ + +L Sbjct: 489 TPALC-ATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGIIGGMLNKAGRYMIVYVLI 547 Query: 532 LAAIGVLGATIGRDFLPYLDEGSIWLQVQLPPGISLDKASELADRLRAATHEFPEVEHIV 591 +A +G+L + FLP D+G I VQLPPG S + + + ++ + P VEH + Sbjct: 548 VACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAVVKQIEEYYLKDPAVEHAI 607 Query: 592 TQVGRNDDGTDPFTPSHIECAVTLHPYSEWKSGWTKQELIAHMSERYKKLAGIDVGFTQP 651 +G + F+ + A+ P +W Q A + + + I P Sbjct: 608 AVLGYS------FSGNGQNAALVFTPLKDWSQRDKSQSADAIAGKAFGAFSQIKDAIVFP 661 Query: 652 MIDGVLDKLSGSHSDLAVKI---FGNDFGEMRVLANAVQGVLQDVPGAADVVIDQEPRLP 708 + + +L G+ + ++ G + N + G+ A V + P Sbjct: 662 LNPPPIPEL-GNATGFTFRLQDRAGLGHTALVQARNQILGMASQSKVLAGVRPEGLEDAP 720 Query: 709 QVRVNVDRAAAARLGINVSDIMALIQTGIGGSPVTQVFIEERSYNVAAVFNDGARSTPEA 768 Q+++++DR A LG+ S I +++ T +G S V R V + R PE Sbjct: 721 QLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQRVIVQADAKRRLQPED 780 Query: 769 LGNLTLVAANGAHVALSQVAHITMEDGETTITREMNRRHLTVRLNLRGRDLASFLDDAKA 828 L NL ++G V S +G + R + + G +A A Sbjct: 781 LTNLYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPAMKIA---GGAAPGRSTGEAMA 837 Query: 829 RIAQQVHYDHSRYEIAWGGQFENQQRAQSRLALILPMALAFMFVLLFAEFKNLRQPALIL 888 + V + W GQ ++ + ++ + ++L +F++L A +++ P ++ Sbjct: 838 EMESFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAVM 897 Query: 889 LCVPLATLGGLVALHLRDMTLNVSSAVGFIALFGVAVLNAIIMMSNLNRWVSQSGLPLRE 948 L VPL LG L+ + LR M +V VG IA+ G++ NAI+++ + + G L E Sbjct: 898 LVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILII-EFAKDLQAQGKGLIE 956 Query: 949 AVIGGALERMRPVLMTATVAALGLVPAAIAHGLGSDVQRPLATVVVGGLMSATVLTLVLL 1008 A + R RP++MT+ LG++P AIA G GS QR + T V+GG+++ATVL + L+ Sbjct: 957 ATLEAVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLV 1016 Query: 1009 PALYYLIESKLA----QRAGSAPHD 1029 P + ++ QR A H Sbjct: 1017 PIFFVVVRKIFKGSERQRKFDAEHS 1041 >gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 243 bits (619), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 276/1044 (26%), Positives = 458/1044 (43%), Gaps = 68/1044 (6%) Query: 18 LVFLLAALYGWYCWNQLPLEAYPDIADVTSQVVTQVNGLAAEEVEQQITIPLERQIMGTP 77 L+ L L G + LPL A P++ T QVVT G + + + +T PLERQ P Sbjct: 16 LLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMTSSVTAPLERQFGQMP 75 Query: 78 GMHVMRSESTFGLSLITVVFNDGAEDYWSRQRLQERISAVS--LPYG-AQPGLDALTSPI 134 G+ M S S+ G S+IT+ FN + Q +Q I+A S LP P + + +P Sbjct: 76 GLKQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAGSNLLPSDLPMPPVYSKVNPA 135 Query: 135 GE-IYRYTLQSKTRDLRELSELQFWKVIPRLKQVPGVVDVSNFGGLTTQFMLELDPAKLI 193 I + S T L ++ +L ++ ++ Q+ GV VS GG ++L+P + Sbjct: 136 DTPIITLAVTSNTMPLPKVQDLIDTRIAQKISQLSGVGLVSLSGGQRPAVRMQLNPRAVA 195 Query: 194 KYNTSLNQISQAISANNANAGGSIMKRGEQGLVIRGVGLIRSLDDLGNIVVSQKNGVPVL 253 +L+ + AI N N + I +RS D+ N++++ KNG P+ Sbjct: 196 ALGLNLDDVRTAIGNANVNQAKGSFDGPTRASTIDANDQLRSADEYRNLIIAYKNGAPIR 255 Query: 254 VKDLGRVVLG----------NQERHGVLGIDHQSDAIEGITLLLKNENPSRVMDGVHAAV 303 V D+ VV G N + ++ I Q A N V+D + + Sbjct: 256 VSDVADVVDGAENVRLGAWANTQPAVIVNIQRQPGA-----------NVIAVVDSIKKIL 304 Query: 304 QDLNDHILPKDVKIVPYIDRSKLVEATVHTVGKTLVEGMLLVSLVLFLFLGSPRAAAIVA 363 L LP + + DR+ + A+V V L+ + LV +V+F+FL + A I + Sbjct: 305 PQLQAS-LPGAIDVHILTDRTTTIRASVDDVKFELLLSVALVVMVIFVFLRNVPATIIPS 363 Query: 364 ITIPLSLLTAFILMHHFNIPANLLSLGAIDF--GILVDGAIVLVESILRLREERPQGEIS 421 + +PLSL+ F +M+ N L+L A+ G +VD AIV++E+I R EE G Sbjct: 364 VAVPLSLVGTFAIMYLAGFSINNLTLMALTIATGFVVDDAIVMIENISRYIEE---GMKP 420 Query: 422 GEDVLRLMRQLARPIFFGMLVIIIAYLPLFAFQRIEYKLFSPMAFAVGFALVGALLVALL 481 + L+ Q+ I +I +PL + +LF A + +++ + +V+L Sbjct: 421 MQAALKGAEQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFHEFAVTLAVSILISAVVSLT 480 Query: 482 LTPGLSWMAYRRPVKVFHNPVLV--WLEPRYRKVLDKLVGKS----RFVLAATLLTL-AA 534 LTP + R H P W + ++ D+++ + ++VLA LTL A Sbjct: 481 LTPMMCARLLR------HQPEEQQGWFYHKSQQFFDRIIARYGVMLQWVLARQKLTLLVA 534 Query: 535 IGVLGATI------GRDFLPYLDEGSIWLQVQLPPGISLDKASELADRLRAATHEFPEVE 588 LG T+ + F P D G I + IS E +L + P VE Sbjct: 535 AATLGLTVLLYVFVPKGFFPLQDTGVIQGISEATQSISFSAMGEKQQQLAKVVLQDPAVE 594 Query: 589 HIVTQVGRNDDGTDPFTPSHIECAVTLHPYSEWKSGWTKQELIAHMSERYK-KLAGIDVG 647 + + +G DGT+ T + + L P+ + T ++I + + ++ GI + Sbjct: 595 SLTSFIGV--DGTNA-TLNSGRMLINLKPHDVREVSAT--DVIRRLQGKLAAEVPGITL- 648 Query: 648 FTQPMIDGVLDKLSGSHSDLAVKIFGNDFGEMRVLANAVQGVLQDVPGAADVVIDQEPRL 707 + QP+ D ++ S S + + D + + LQ ADV + + + Sbjct: 649 YMQPVQDLTIED-SVSRTQYQFTLEDADPAVLSTWVPKLIARLQQQSELADVATNLQDQG 707 Query: 708 PQVRVNVDRAAAARLGINVSDIMALIQTGIGGSPVTQVFIEERSYNVAAVFNDGARSTPE 767 Q + +DR AA+RLGI + I + G ++ ++ + Y V + P Sbjct: 708 LQAYIEIDRNAASRLGITTAAIDNALYNAFGQRLISTIYTQSNQYRVVMEVKPEFQHGPA 767 Query: 768 ALGNLTLVAANGAHVALSQVAHITMEDGETTITREMNRRHLTVRLNL-RGRDLASFLDDA 826 AL ++ LV + G V LS +A +T + TV NL +G L + Sbjct: 768 ALDSIYLVTSGGGKVPLSSIATVTERTAPLVVNHIGQFPAATVSFNLAKGASLGEAVKAI 827 Query: 827 KARIAQQVHYDHSRYEIAWGGQFENQQRAQSRLALILPMALAFMFVLLFAEFKNLRQPAL 886 KA +++ S G Q + L LIL A+ M+++L +++ P Sbjct: 828 KAA-EEEIGMPASTVTNFQGAALAFQASLSNTLWLIL-AAIVTMYIVLGVLYESYIHPIT 885 Query: 887 ILLCVPLATLGGLVALHLRDMTLNVSSAVGFIALFGVAVLNAIIMMSNLNRWVSQSGLPL 946 IL +P A +G L++L + L + +G I L G+ NAI+M+ G Sbjct: 886 ILSTLPSAGVGALLSLMISGTDLGIIGIIGIILLIGIVKKNAIMMIDFALEAERHEGKSP 945 Query: 947 REAVIGGALERMRPVLMTATVAALGLVPAAIAHGLGSDVQRPLATVVVGGLMSATVLTLV 1006 REA+ L R RP+LMT A LG +P + G+GS++++PL +VGGL+ + VLTL Sbjct: 946 REAIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLGITMVGGLLVSQVLTLF 1005 Query: 1007 LLPALYYLIES-------KLAQRA 1023 P +Y +S + QRA Sbjct: 1006 TTPVIYLGFDSLGRRLRARFGQRA 1029 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 230 bits (586), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 256/1036 (24%), Positives = 466/1036 (44%), Gaps = 66/1036 (6%) Query: 18 LVFLLAALYGWYCWNQLPLEAYPDIADVTSQVVTQVNGLAAEEVEQQITIPLERQIMGTP 77 +V L L+G +QLP+ YP +A T + G + + + +ER++ G Sbjct: 14 VVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDGVISLIERELSGVK 73 Query: 78 GM-HVMRSESTFGLSLITVVFNDGAEDYWSRQRLQERISAVS--LPYGA-QPGLDALTSP 133 + + S T G + I+V F G + ++ +Q ++ A+ LP Q G+ ++ Sbjct: 74 NLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQTVRQNGVTVESAA 133 Query: 134 IGEIYRYTLQS--KTRDLRELSELQFWKVIPRLKQVPGVVDVSNFGGLTTQFMLELDPAK 191 + +L S D L++ ++ L+++ GV V FG + LDP K Sbjct: 134 SSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGA-EQAMRIWLDPFK 192 Query: 192 LIKYNTSLNQISQAISANNANA-----GGSIMKRGEQ-GLVIRGVGLIRSLDDLGNIVVS 245 L Y ++ IS AIS NA G + RG+Q + + G ++S IV+ Sbjct: 193 LNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQLQSPAQFAAIVLK 252 Query: 246 QK-NGVPVLVKDLGRVVLGNQERHGVLGIDHQSDAIEGITLLLKNENPSRVMDGVHAAVQ 304 K +G VL+ D+ RV LG Q + ++ A L N R + A ++ Sbjct: 253 AKADGSRVLLGDVARVELGAQS-YAFANRENGKPAGVAAVQLSPGANAVRTAAAIQARME 311 Query: 305 DLNDHILPKDVKI-VPYIDRSKLVEATVHTVGKTLVEGMLLVSLVLFLFLGSPRAAAIVA 363 +L LP+ + +PY + + V+ ++ V +TL+E M+LV LV++LFL + R I A Sbjct: 312 ELRPS-LPQGMAFSLPY-NTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQNVRYTVIPA 369 Query: 364 ITIPLSLLTAFILMHHFNIPANLLSLGA--IDFGILVDGAIVLVESILRLREERPQGEIS 421 I P++LL +M N+L++ + GI+VD AIV+VE++ R+ +G Sbjct: 370 IVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIMAH--EGLGP 427 Query: 422 GEDVLRLMRQLARPIFFGMLVIIIAYLPLFAFQRIEYKLFSPMAFAVGFALVGALLVALL 481 E ++ M ++ I LV+ ++P+ ++ + A+ +++ + +AL Sbjct: 428 REATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILFSAFLALS 487 Query: 482 LTPGLSWMAYRRPVKVFH----------NPVLVWLEPRYRKVLDKLVGKS-RFVLA-ATL 529 LTP L RPV H N L RY L +L+ + R +L A L Sbjct: 488 LTPALC-ATLLRPVPAGHHDKRGFFGAFNRAFNRLTARYESALGRLIARGLRMMLVYAAL 546 Query: 530 LTLAAIGVLGATIGRDFLPYLDEGSIWLQVQLPPGISLDKASELADRLRAATHEFPEVEH 589 L +G+ + FLP D+G QLP + ++ + D+ ++ Sbjct: 547 SGLLVVGM--QALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERYLKGREDIGA 604 Query: 590 IVTQVGRNDDGTDPFTPSHIECAVTLHPYSEWKSGWTKQELIAHMSERYKKLAGIDVGFT 649 ++ +G G+ P A+ +WK M+ + +G+D G Sbjct: 605 NLSVLGFGFSGSGP------NAAMAFTELKDWKERKGSTSAAEAMAAQAAMESGVD-GMV 657 Query: 650 QPMIDGVLDKLSGSHSDLAVKI---FGNDFGEMRVLANAVQGVLQDVPGAADVVIDQEPR 706 ++ +++L G+ S A+++ + ++ + + + V D P Sbjct: 658 MSLLPPAIEEL-GNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSRKLSGVYSDGLPA 716 Query: 707 LPQVRVNVDRAAAARLGINVSDIMALIQTGIGGSPVTQVFIEERSYNVAAVFNDGARSTP 766 V++ +DR AA LG++ S I + +G V R V AR Sbjct: 717 GASVQLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVILQAQASARMQL 776 Query: 767 EALGNLTLVAANGAHVALSQVAHITMEDGETTITREMNRRHLTVRLN-------LRGRDL 819 E + L + +G V L+++ + + T + R VR++ G + Sbjct: 777 EDVMKLYVRNQSGGMVPLAELVKASWREAPTQLQRYQG--FPAVRISGSAAPGVASGEAM 834 Query: 820 ASFLDDAKARIAQQVHYDHSRYEIAWGGQFENQQRAQSRLALILPMALAFMFVLLFAEFK 879 A R+AQQ+ + +AW GQ ++ + ++ +++ +++ +F++L A ++ Sbjct: 835 AEM-----ERLAQQLP---PGFAVAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAALYE 886 Query: 880 NLRQPALILLCVPLATLGGLVALHLRDMTLNVSSAVGFIALFGVAVLNAIIMMSNLNRWV 939 + P ++L VPL +G + A+ LRDM +V VG I + G++ NAI+++ R + Sbjct: 887 SWSIPLSVMLVVPLGLVGAVAAVILRDMPNDVFFKVGMITVIGLSAKNAILIV-EFARQL 945 Query: 940 SQSGLPLREAVIGGALERMRPVLMTATVAALGLVPAAIAHGLGSDVQRPLATVVVGGLMS 999 G+ L EA I ++ R+RP+LMT+ ALG+VP +A G ++ QR + T V GG++S Sbjct: 946 RSEGMGLVEAAIKASVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVS 1005 Query: 1000 ATVLTLVLLPALYYLI 1015 ATVL ++ +P + L+ Sbjct: 1006 ATVLAVLFVPVFFVLV 1021 >gi|300313900|ref|YP_003777992.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1063 Score = 228 bits (580), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 280/1080 (25%), Positives = 489/1080 (45%), Gaps = 95/1080 (8%) Query: 5 LVSLCFQRRGIVQLVFLLAALYGWYCWNQLPLEAYPDIADVTSQVVTQVNGLAAEEVEQQ 64 +V+L +R ++ LL L + + +P+I ++ NGL+A+E+ Q+ Sbjct: 3 MVALALRRPYTFIVMALLIVLATPLTLKNMATDIFPEINIPVVSIIWNYNGLSAQEMGQR 62 Query: 65 ITIPLERQIMGT-PGMHVMRSESTFGLSLITVVFNDGAEDYWSRQRLQERISAV--SLPY 121 I ER + + + S+S G+S+I V F A + ++ + LP Sbjct: 63 IAAQNERGLTTVVSDIEHIESQSLAGVSVIKVFFQPKANIQTAIAQVVASVQTQVRQLPP 122 Query: 122 GAQPGL----DALTSPIGEIYRYTLQSKTRDLRELSELQFWKVIPRLKQVPGVVDVSNFG 177 G P L A + P+ ++ L S T + + + + P+L +PGV +G Sbjct: 123 GITPPLVIKYSASSIPVMQL---ALSSPTLPEQTVFDAAVQTLRPQLVTIPGVAVPYPYG 179 Query: 178 GLTTQFMLELDPAKLIKYNTSLNQISQAISANNANAGGSIMKRGEQGLVIRGVGLIRSLD 237 G + ++LD L + + AI+ N K G ++ G ++ Sbjct: 180 GKSRLISVDLDTQALQARGLAPIDVVNAINTQNLILPSGTAKFGATEYSVKINGSPEAVA 239 Query: 238 DLGNIVVSQKNGVPVLVKDLGRVVLGNQERHGVLGIDHQSDAIEGITL-LLKNENPSR-- 294 L + V NG + +KD+ V G + V+ + D G+ L +LKN S Sbjct: 240 GLNELPVRTTNGATIYLKDVANVRDGFSPQTNVV----RQDGARGVLLSILKNGGASTLD 295 Query: 295 VMDGVHAAVQDLNDHILPKDVKIVPYIDRSKLVEATVH-TVGKTLVEGMLLVSLVLFLFL 353 ++D + + LP+D+KI P D+S V+A V + + L+ L ++VL LFL Sbjct: 296 IVDNLRKLLPT-AAQTLPEDIKITPLFDQSVFVKAAVTGVISEALIAAGLTAAMVL-LFL 353 Query: 354 GSPRAAAIVAITIPLSLLTAFILMHHFNIPANLLSLG--AIDFGILVDGAIVLVESILRL 411 G+ R+ I+ +TIPLS++ A +++ NL++LG A+ GILVD AIV +E+I R Sbjct: 354 GNWRSTLIIGLTIPLSIMAAILILAALGETLNLMTLGGLALSVGILVDQAIVTIENIER- 412 Query: 412 REERPQGEISGEDVLRLMRQLARPIFFGMLVIIIAYLPLFAFQRIEYKLFSPMAFAVGFA 471 G+ + ++ ++ P F L I I ++P+F + LF P+A AV FA Sbjct: 413 --HLHLGKPLHDAIIVGAGEIGVPAFVATLCICIVFVPMFFLSGVARFLFVPLAEAVVFA 470 Query: 472 LVGALLVALLLTPGLSWMAY--------------RRPVKVFHNPVLVWLEPRYRKVLDKL 517 + + L++ L P L + +R + F N + Y VL L Sbjct: 471 MAASYLLSRTLVPTLVMLLMGSHGQVDSAKQSLLQRLYRAFDN-RFERVRHGYTLVLSSL 529 Query: 518 VG-KSRFVLAATLLTLAAIGVLGATIGRDFLPYLDEGSIWLQVQLPPGISLDKASELADR 576 + + RF LA L + +L +GRDF P +D G I L +++P G +++ + AD Sbjct: 530 LAHRRRFALAFLGFCLLSC-LLYPFLGRDFFPNVDGGQIRLHMRMPTGTRIEETARAADE 588 Query: 577 LRAATHEF---PEVEHIVTQVGRNDDGTDPFTPSHIECAVTL--HPYSEWKSGWTKQELI 631 + E+E I+ +G + G + + S+ TL K G E + Sbjct: 589 VERVIRTLIPASELETILDNLGVPNSGIN-LSYSNAGTIGTLDGEILMALKEGHRPTEAL 647 Query: 632 AHM--SERYKKLAGIDVGFTQPMIDGVLDKLS-GSHSDLAVKIFGNDFGEMRVLANAVQG 688 M +E ++ GI+ F QP D V L+ G + + V+ G + LA + Sbjct: 648 VSMLRAELPRRFPGIEF-FFQPA-DIVTQILNFGLPAAIDVQFTGPNMEANARLAAELTK 705 Query: 689 VLQDVPGAADVVIDQEPRLPQVRVNVDRAAAARLGINVSDIMALIQTGIGGSPVTQ---- 744 ++ +PGA D + Q P + + +DR + G++ S++ + + GS TQ Sbjct: 706 QIRQIPGAVDAHVHQRLDGPSLDLRMDRTRLQQFGLSASNVGQNLLIALAGSSQTQPAFW 765 Query: 745 ----------VFIEERSYNVA---AVFN-------DGARSTPEALGNLTLVAANGAHVAL 784 + ++ Y V A+ N + + + P+ LGNL V A G +A+ Sbjct: 766 LNPNNGVVYNIAVQSPQYQVDSLDALLNIPVSPGANASTTPPQLLGNLVDVHA-GRQMAV 824 Query: 785 SQVAHITMEDGETTITREMNRRHLTVRLNLRGRDLASFLDDAKARIAQQVHYDHSR-YEI 843 + +I + V ++++G DLAS A + +Q+ +R ++ Sbjct: 825 ASRYNIA--------------PAIDVYVSVQGTDLASVAGKVSA-LVEQIKPKLARGSQV 869 Query: 844 AWGGQFENQQRAQSRLALILPMALAFMFVLLFAEFKNLRQPALILLCVPLATLGGLVALH 903 GQ E Q + + L + L MA+ +++L+ F++ A+I+ +P A G L Sbjct: 870 VIRGQVETMQSSFTGLGVGLAMAIVLVYLLVVVNFQSWIDAAIIIAALPAALAGIAWMLF 929 Query: 904 LRDMTLNVSSAVGFIALFGVAVLNAIIMMSNLNRWVSQSGLPLREAVIGGALERMRPVLM 963 + TL+V + G I GVA N+I++++ + + PL A+ G+ R+RPVLM Sbjct: 930 ITGTTLSVPALTGAIMTMGVATANSILIVAFARQRREEGATPLAAALEAGS-TRIRPVLM 988 Query: 964 TATVAALGLVPAAIAHGLGSDVQRPLATVVVGGLMSATVLTLVLLPALYYLIESKLAQRA 1023 TA +G++P A+ G G++ PL V+GGLM ATV TL +P ++ + +LA+RA Sbjct: 989 TALAMIIGMIPMALGLGEGAEQNAPLGRAVIGGLMLATVSTLFFVPVVFAGVHQRLARRA 1048 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.139 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,992,926 Number of extensions: 120956 Number of successful extensions: 556 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 457 Number of HSP's successfully gapped: 18 Length of query: 1034 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 939 Effective length of database: 1,170,045 Effective search space: 1098672255 Effective search space used: 1098672255 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 135 (56.6 bits)