BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2178.p (573 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis dom... 608 e-175 gi|300311753|ref|YP_003775845.1| methyl-accepting chemotaxis tra... 362 e-101 gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis tra... 303 3e-83 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 285 6e-78 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 281 1e-76 >gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 568 Score = 608 bits (1569), Expect = e-175, Method: Compositional matrix adjust. Identities = 313/555 (56%), Positives = 409/555 (73%) Query: 1 MSIYKRFSIRQILLALTVSVVLIMALLVAVAVAEAQANHVLAEAHARHHLSQQLASELRQ 60 +S+ RFSIRQI + LT + ++M L+V A+A + + L A+ + S LA+ELRQ Sbjct: 3 ISLVSRFSIRQIFIMLTAVITVLMTLIVLAALAVDRYDARLNAANESRYASFLLATELRQ 62 Query: 61 SSDDLTRLARTYVVTGNPDYEQQYQAILDIRDGKRPRPQHYQRIYWDLVAADGQPPRPDS 120 SSDDLTRLARTYVVTG+P YEQQY+AILDIR+GK+ RP+HY RIYWD VAADG+ PRPDS Sbjct: 63 SSDDLTRLARTYVVTGDPSYEQQYEAILDIRNGKKARPEHYGRIYWDFVAADGKAPRPDS 122 Query: 121 TLTASLESLMRQAGFSRAEMDKLMEAKNNSDALVATETRAMQMIKGRYQDQQGGFFRLAE 180 +L LMR AGF+ AEM KL EAKNNSDALV TE AM M+KG Y D QG F + A+ Sbjct: 123 NQHVALTDLMRAAGFTAAEMGKLEEAKNNSDALVKTEVIAMNMVKGLYADAQGNFTKRAD 182 Query: 181 PDLEQARTLMHDHAYHLEKARIMRPVDDFLAMLEARTTYEIAQAQQRADRLNVLTYVLAG 240 PDL QAR LMH+HAYH+ KA+IMRPVD+F A+L+ARTT ++ A+ +A + L Y L Sbjct: 183 PDLAQARELMHNHAYHVYKAKIMRPVDEFFALLDARTTEQVESARAQATHMATLFYSLIA 242 Query: 241 LVLVVLALSLVSLYRLIAGPLSQAAQVATRVAQGDLSGVIEVELKGETGQLLSSLQHMRQ 300 + LVVLA +L+ +Y I PL+ AA VA RVA GDL+ I+ +KGETG+LL +L M+ Sbjct: 243 IALVVLACTLMLVYHAIRNPLAHAASVARRVAHGDLTAQIDPAIKGETGELLEALTIMQS 302 Query: 301 GLSHIVRQVRQSARVMRGSAGDIADGALDLAMRSEQQASSLQQTAAAMEQLSSTVQQSAQ 360 GL IV VR A+ + SA +IA G LDL+ R+EQQASSL++TA++ME+L+STV+Q+A Sbjct: 303 GLQTIVLDVRNGAQYINTSANEIASGTLDLSSRTEQQASSLEETASSMEELTSTVKQNAG 362 Query: 361 HARQASALAESAARGAVDGGAAVSQVVEAMNVLQGAAGRIVDIISVIDAIAFQTNILALN 420 +AR AS LA +A+ AV GG V++VV+ M + ++ RIVDII+VID IAFQTNILALN Sbjct: 363 NARLASELANTASGVAVRGGEVVARVVDTMGAINESSKRIVDIIAVIDGIAFQTNILALN 422 Query: 421 AAVEAARAGSEGRSFAVVASEVRVLAQRSADAAHEIKRLIGASVQSIEEGCQRAQVAGQT 480 AAVEAARAG +GR FAVVA+EVR LAQRSA AA EIK LI SV +E G AG T Sbjct: 423 AAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKTLIDNSVSKVEAGSTLVNEAGST 482 Query: 481 MQEVVSKVDRVSQVIAEMASVSVQQSAGVVQIAQAVSAMDQVTQHNAVLVQQSAAAAEAM 540 M+EVV V RV+++I +++ S +Q++G+ QI QA++ MDQVTQ NA LV+Q++AA+E+M Sbjct: 483 MREVVESVQRVTEIITGISNASQEQASGIEQIQQAINQMDQVTQQNAALVEQASAASESM 542 Query: 541 RLATERMSKLVGAFR 555 ++ +++ LVGAF+ Sbjct: 543 QMQAHKLTDLVGAFK 557 >gi|300311753|ref|YP_003775845.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 559 Score = 362 bits (930), Expect = e-101, Method: Compositional matrix adjust. Identities = 241/577 (41%), Positives = 350/577 (60%), Gaps = 22/577 (3%) Query: 1 MSIYKRFSIRQILLALTVSVVLIMALLVAVAVAEAQANHVLAEAHARHHLSQQLASELRQ 60 MSI RFS+RQ L L V +++ + V +A LA+A + LA+E RQ Sbjct: 1 MSILHRFSVRQALRGLVALVAVLVVMWGTATVYAERARQALAQAQETRFTALALAAEFRQ 60 Query: 61 SSDDLTRLARTYVVTGNPDYEQQYQAILDIRDGKRPRPQHYQRIYWDLVAADGQPPRPDS 120 DDL +LAR+YVV+G P +Q+QA+LDIRDG+R RPQ Y R+YWDLV ADGQPPRPDS Sbjct: 61 GVDDLAQLARSYVVSGEPRLLEQHQAVLDIRDGQRARPQQYGRVYWDLVGADGQPPRPDS 120 Query: 121 TLTASLESLMRQAGFSRAEMDKLMEAKNNSDALVATETRAMQMIKG----RYQDQQGGFF 176 T+ SL LM QAG+S AE+ +L EA SDAL +TE RAMQ ++G R QQ Sbjct: 121 TVAVSLRKLMEQAGYSPAELARLDEAWLMSDALASTERRAMQEMQGDAGARGPAQQ---- 176 Query: 177 RLAEPDLEQARTLMHDHAYHLEKARIMRPVDDFLAMLEARTTYEIAQAQQRADRLNVLTY 236 ++H Y L + I++ DD + +LE RT E+A AQ A RL L+ Sbjct: 177 ------------MLHGDGYQLHRTSILQAFDDMVGLLEQRTAREVALAQLLAQRLAWLST 224 Query: 237 VLAGLVLVVLALSLVSLYRLIAGPLSQAAQVATRVAQGDLSGVIEVELKGETGQLLSSLQ 296 +LA V+V+LA+SL LYR AGPL+QA + ++A+GDLS V +G+ LL +LQ Sbjct: 225 LLAVAVVVILAVSLRLLYRGSAGPLAQATSMLAQLARGDLSDSAPVRARGQVAALLDALQ 284 Query: 297 HMRQGLSHIVRQVRQSARVMRGSAGDIADGALDLAMRSEQQASSLQQTAAAMEQLSSTVQ 356 +R+ + +V+ V A ++ +AGD+A G + R+E+QA +L Q AA+M+QL+ TVQ Sbjct: 285 RLRKAIVRLVKGVHAGAAAIQNAAGDMAAGTEHVVARTEEQAQALLQAAASMQQLAGTVQ 344 Query: 357 QSAQHARQASALAESAARGAVDGGAAVSQVVEAMNVLQGAAGRIVDIISVIDAIAFQTNI 416 Q H QAS LA A A V QV AM ++ ++ RI D+ +ID+IA Q+ + Sbjct: 345 QHTAHTHQASRLARRACEVVRRSAAEVEQVASAMAAIKASSARITDLGGLIDSIAVQSKL 404 Query: 417 LALNAAVEAARAGSEGRSFAVVASEVRVLAQRSADAAHEIKRLIGASVQSIEEGCQRAQV 476 L +A++ +G GR+ + VA +V LAQR+A AA E K L ++Q I+ G ++A Sbjct: 405 LGASASLAGCGSGVGGRTLSSVAQDVSALAQRTASAAAEFKSLTETALQQIQNGSRKAVQ 464 Query: 477 AGQTMQEVVSKVDRVSQVIAEMASVSVQQSAGVVQIAQAVSAMDQVTQHNAVLVQQSAAA 536 A M+E V V+RVSQ+I ++A V+++Q++G+ Q+ Q + + +TQ N +L+QQ+ +A Sbjct: 465 AEGAMREAVYSVERVSQLIGQIAEVNLEQTSGIDQVVQVLRQVQLLTQQNGLLLQQTTSA 524 Query: 537 AEAMRLATERMSKLVGAFRLDHGDVPEDDGLVIDMAA 573 A A+ TE++++ FRL+ G ED +VIDM A Sbjct: 525 ARALNEQTEQLTQAAAEFRLEAG--YEDGCMVIDMPA 559 >gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 595 Score = 303 bits (775), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 194/550 (35%), Positives = 313/550 (56%), Gaps = 34/550 (6%) Query: 2 SIYKRFSIRQILLALTVSVVLIMALLVAVAVAEAQANHVLAEAHARHHLSQQLASELRQS 61 ++ R SI+Q+ + L + + +++A++V++ A AN L AH + S LA+ELR++ Sbjct: 4 TMTHRMSIKQLFIWLALVLSILVAVVVSLTGALKDANLELERAHQSRYDSTALANELRRT 63 Query: 62 SDDLTRLARTYVVTGNPDYEQQYQAILDIRDGKRPRPQHYQRIYWDLVAA------DGQP 115 ++D+T+ AR YV TG+P+ E +Y I+DIR+GKR RP +Y R WDLV A G P Sbjct: 64 AEDMTKFARAYVTTGDPNDEDRYYMIMDIRNGKRARPSNYDRFNWDLVNARKLALDPGAP 123 Query: 116 PRPDSTLTASLESLMRQAGFSRAEMDKLMEAKNNSDALVATETRAMQMIKGRYQDQQGGF 175 P L LM++AGF+ E+ K+ EA D L E A +KG + D +G + Sbjct: 124 GVP-------LGELMKRAGFTDEELAKMQEALKLGDQLAKIEITAFHAVKGEFDDGEGKY 176 Query: 176 FRLAEPDLEQARTLMHDHAYHLEKARIMRPVDDFLAMLEARTTYEIAQA-QQRADRLNVL 234 + P+ A+ L+ D Y ++M PV+DFL +++ RT + QA + A+ + Sbjct: 177 TVIGAPNQAMAQELVFDQTYRTLFGKLMSPVNDFLRLVDERTQANVRQAGKDYAELEQKI 236 Query: 235 TYVLAGLVLVVLALSLVSLYRLI----AGPLSQAAQVATRVAQGDLSGVIEVELKGETGQ 290 ++LA V+V+ A +S YR+I G A V RVA+GDL+ V+ + KG+ Sbjct: 237 FWLLAASVVVLFACLWLS-YRIIRSQIGGEPRDAMSVLRRVAEGDLTVVVPLP-KGDKLS 294 Query: 291 LLSSLQHMRQGLSHIVRQVRQSARVMRGSAGDIADGALDLAMRSEQQASSLQQTAAAMEQ 350 +L S Q M + ++ V +A + ++ I+ + L+ + QQA+++++T+A++E+ Sbjct: 295 VLYSTQQMINKWTDVIGDVSGTATSLASASEQISSSSQALSHNAAQQAANVEETSASVEE 354 Query: 351 LSSTVQQSAQHARQASALAESAARGAVDGGAAVSQVVEAMNVLQGAAGRIVDIISVIDAI 410 +++T+ Q+A +AR +A +A A +GG AV + V AM +I I +ID I Sbjct: 355 ITATIAQNADNARTTDGIASLSASAATEGGEAVRETVAAMK-------QIASKIGIIDDI 407 Query: 411 AFQTNILALNAAVEAARAGSEGRSFAVVASEVRVLAQRSADAAHEIKRLIGASVQSIEEG 470 A+QTN+LALNAA+EAARAG G+ FAVVA+EVR LA+RS AA EI + E Sbjct: 408 AYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQSAAQEI-------IAVAETS 460 Query: 471 CQRAQVAGQTMQEVVSKVDRVSQVIAEMASVSVQQSAGVVQIAQAVSAMDQVTQHNAVLV 530 A+ AG + ++V + + + ++ E+A+ S +QS G+ QI AV M Q TQ A Sbjct: 461 VGLAEKAGGLLNQMVPSIRKTADLVQEIAAASHEQSTGLEQINNAVHQMAQTTQMTASAS 520 Query: 531 QQSAAAAEAM 540 ++ +A +E M Sbjct: 521 EELSATSEEM 530 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 285 bits (730), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 160/302 (52%), Positives = 219/302 (72%) Query: 255 RLIAGPLSQAAQVATRVAQGDLSGVIEVELKGETGQLLSSLQHMRQGLSHIVRQVRQSAR 314 R+IA PL A + A +A GDL+ I ETGQL ++L M L IV QVR Sbjct: 214 RVIATPLRSAGEFAHLIAAGDLTADITARSDDETGQLTAALAAMNTSLRRIVSQVRSGTD 273 Query: 315 VMRGSAGDIADGALDLAMRSEQQASSLQQTAAAMEQLSSTVQQSAQHARQASALAESAAR 374 + ++G I+ G LDL+ R+E+QASSL++TA+AME+L+STV+Q+A++ARQA+ LA SA+ Sbjct: 274 AIATASGQISSGNLDLSSRTEEQASSLEETASAMEELTSTVRQNAENARQANQLALSAST 333 Query: 375 GAVDGGAAVSQVVEAMNVLQGAAGRIVDIISVIDAIAFQTNILALNAAVEAARAGSEGRS 434 A +GG VSQV+E M + ++ +IVDIISVID+IAFQTNILALNAAVEAARAG +GR Sbjct: 334 IAEEGGKVVSQVIETMGSIDASSKKIVDIISVIDSIAFQTNILALNAAVEAARAGEQGRG 393 Query: 435 FAVVASEVRVLAQRSADAAHEIKRLIGASVQSIEEGCQRAQVAGQTMQEVVSKVDRVSQV 494 FAVVA+EVR LAQRSA AA EIK LI SVQ + G Q AG T+ EVVS V RV+ V Sbjct: 394 FAVVATEVRSLAQRSATAAKEIKTLIDNSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDV 453 Query: 495 IAEMASVSVQQSAGVVQIAQAVSAMDQVTQHNAVLVQQSAAAAEAMRLATERMSKLVGAF 554 ++E+++ S +Q+ G+ Q+ QA++ MD+VTQ NA LV+++A+A++++ +R+S+LVG F Sbjct: 454 MSEISAASGEQTQGIEQVNQAITQMDEVTQQNAALVEEAASASQSLSHQAQRLSELVGVF 513 Query: 555 RL 556 RL Sbjct: 514 RL 515 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 281 bits (719), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 167/302 (55%), Positives = 215/302 (71%) Query: 257 IAGPLSQAAQVATRVAQGDLSGVIEVELKGETGQLLSSLQHMRQGLSHIVRQVRQSARVM 316 I PL +A V+ VA+GDLS I V + ETGQLL SL+ M Q L IV VR + Sbjct: 215 ITKPLHRAVDVSRCVAEGDLSSEIAVTSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTI 274 Query: 317 RGSAGDIADGALDLAMRSEQQASSLQQTAAAMEQLSSTVQQSAQHARQASALAESAARGA 376 ++ +IA G LDL+ R+EQQASSL +TA+AME+L STV+Q+A +ARQAS LA SA+ A Sbjct: 275 STASSEIAAGNLDLSSRTEQQASSLAETASAMEELISTVRQNADNARQASQLANSASAVA 334 Query: 377 VDGGAAVSQVVEAMNVLQGAAGRIVDIISVIDAIAFQTNILALNAAVEAARAGSEGRSFA 436 GG VSQVV+ M + ++ +IVDIISVID IAFQTNILALNAAVEAARAG +GR FA Sbjct: 335 EQGGGVVSQVVDTMGAINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA 394 Query: 437 VVASEVRVLAQRSADAAHEIKRLIGASVQSIEEGCQRAQVAGQTMQEVVSKVDRVSQVIA 496 VVASEVR LAQRSA AA EIK LI SV +++G + + AG TMQEVVS V RV+ ++A Sbjct: 395 VVASEVRTLAQRSASAAKEIKELINDSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVA 454 Query: 497 EMASVSVQQSAGVVQIAQAVSAMDQVTQHNAVLVQQSAAAAEAMRLATERMSKLVGAFRL 556 E+++ S +Q+ G+ QI A++ MDQVTQ NA LV+++AAAA +M+ R+ ++V FRL Sbjct: 455 EISAASTEQTHGIEQINLAITQMDQVTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRL 514 Query: 557 DH 558 Sbjct: 515 SE 516 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.127 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,104,637 Number of extensions: 35775 Number of successful extensions: 325 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 253 Number of HSP's successfully gapped: 70 Length of query: 573 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 483 Effective length of database: 1,193,720 Effective search space: 576566760 Effective search space used: 576566760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)