BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2175.p
         (257 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311756|ref|YP_003775848.1| lipoprotein [Herbaspirillum ser...   308   4e-85

>gi|300311756|ref|YP_003775848.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 265

 Score =  308 bits (788), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 167/258 (64%), Positives = 191/258 (74%), Gaps = 11/258 (4%)

Query: 9   LFSSAALLASFKAPTAQAASFDCSKAGSANEKTICHDPQLSALDDQLGHAYRQARRAATD 68
           LF+  AL ++    + +AASFDC+KAGS+NEK IC D QLSALDD+LG  +RQAR +A+D
Sbjct: 10  LFTFTAL-SALAWHSTRAASFDCAKAGSSNEKMICADAQLSALDDRLGALFRQARASASD 68

Query: 69  VRAFRAASDAQWLWREHHCHDRDCLLAWYQRRQAELQAQAVPVTASVAAPALASLAP--- 125
            RA RA +D  W WRE HCHDR CLLAWYQRR  ELQAQA   +AS   PALA  AP   
Sbjct: 69  KRALRADADQHWRWREQHCHDRSCLLAWYQRRSIELQAQANAASASDPVPALAHRAPKDA 128

Query: 126 --AAPIPPAA----PPLQLRLNDRQIEGVAPNGASPWPHYTRAEHGQYFYRDPQASDAQP 179
             A   P AA     PLQL LN  Q+  +AP GASPWPHY R E GQYFY DPQ  + Q 
Sbjct: 129 ALAVNRPEAAVLTQSPLQLGLNPSQLAAIAPPGASPWPHYVRVERGQYFYEDPQTPERQ- 187

Query: 180 LVAVRYYGVENGQYILEAVRGNTVLRYTCSADCHYISQLALPGDIEKDTVIVDNERGSLP 239
           LV VRYYG+E+GQYILEAVRG TVLRYTCS DC YI QL+LPGD+EKDTVIV N+R SLP
Sbjct: 188 LVGVRYYGMEHGQYILEAVRGQTVLRYTCSDDCSYIGQLSLPGDVEKDTVIVSNDRHSLP 247

Query: 240 ALIVSDAVNGLLAPSLSR 257
           ALIVSDA+NGLLAPS++R
Sbjct: 248 ALIVSDAMNGLLAPSMTR 265


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 664,649
Number of extensions: 23926
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,226,865
Effective search space: 213474510
Effective search space used: 213474510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)