BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2169.p
         (239 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311758|ref|YP_003775850.1| alpha/beta hydrolase superfamil...   372   e-104
gi|300313655|ref|YP_003777747.1| signal peptide protein [Herbasp...    65   6e-12
gi|300313766|ref|YP_003777858.1| alpha/beta hydrolase superfamil...    64   8e-12

>gi|300311758|ref|YP_003775850.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 243

 Score =  372 bits (954), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/243 (79%), Positives = 216/243 (88%), Gaps = 4/243 (1%)

Query: 1   MANFLLIHGAWQGKWVWPAVSAELTMRGHEVHSIDLPGSGEDATPLQQVSLSLYADTIVQ 60
           MANFLLIHGAWQGKWVWPAVSAELTMRGHEVHSIDLPGSG D TPL QV+LSLYAD IV+
Sbjct: 1   MANFLLIHGAWQGKWVWPAVSAELTMRGHEVHSIDLPGSGADTTPLDQVTLSLYADAIVK 60

Query: 61  AIQAIGKRVTLVGHSMGGIAVTAAAERAADSLARVIYLCAFVPGNGDSLASLSALAPSHQ 120
           AI+AIGKRVTLVGHSMGGIAVTAAAERAADSLAR+IYLCA+VP NGDSL++LS LAP+  
Sbjct: 61  AIKAIGKRVTLVGHSMGGIAVTAAAERAADSLARIIYLCAYVPVNGDSLSALSDLAPARL 120

Query: 121 PA-LDIQSD---AVATRTAADSRVATFMQDAPYAVAHWAAPQFQSQAIAPMMTPVEVSPE 176
           P+ + +  D   A+A+ T   +RV TFMQDAPYAVAHWAAPQF++QA+APM TPV+VS +
Sbjct: 121 PSPVALGHDALAALASDTQPSARVETFMQDAPYAVAHWAAPQFRAQAMAPMTTPVQVSEQ 180

Query: 177 RYGKVPKSYIVCTQDRAIDPVLQRVMAARSGCARIKELESGHSPFLSRPSATAEMLHRMA 236
            YGK+PKSYIVCT+DRAIDPVLQRVMAARSGC+RIKEL S HSPFLSRP+ TAEMLHRM 
Sbjct: 181 AYGKLPKSYIVCTRDRAIDPVLQRVMAARSGCSRIKELASDHSPFLSRPTETAEMLHRMV 240

Query: 237 TEV 239
           TE+
Sbjct: 241 TEL 243


>gi|300313655|ref|YP_003777747.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 261

 Score = 65.1 bits (157), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 100/233 (42%), Gaps = 18/233 (7%)

Query: 2   ANFLLIHGAWQGKWVWPAVSAELTMRGHEVHSIDLPGSGEDATPLQQVSLSLYADTIVQA 61
           A+ +++HGA+     W  V   L  +G +V ++  P +          SL+       +A
Sbjct: 37  ASVVIVHGAFADGSDWAKVIPLLQAKGVKVTAVQNPLT----------SLADDVAAARRA 86

Query: 62  IQAIGKRVTLVGHSMGGIAVTAAAERAADSLARVIYLCAFVPGNGDSLASLSALAPSHQP 121
           I     +V LVGHS GG  +T A     D +A ++Y+ AF P  G +   L    P    
Sbjct: 87  IDNQPGKVVLVGHSWGGTVITEAGNH--DKVASLVYVAAFAPDAGQATGDLGKDLPVPPG 144

Query: 122 ALDIQSDAVA-TRTAADSRVATFMQDAPYAVAHWAAPQFQSQA-IAPMMTPVEVSPERYG 179
              +  D          +  A F QD P   A  AA    +Q  IA      +V    + 
Sbjct: 145 IAKLSVDKAGFASLPPAALAADFAQDVP---AKQAAVMAATQGPIAMKAFGDKVETAAWK 201

Query: 180 KVPKSYIVCTQDRAIDPVLQRVMAARSGCARIKELESGHSPFLSRPSATAEML 232
             P  YIV T+DR I P L+R   A+   A+  EL + H P  SRP+  A+++
Sbjct: 202 TRPSWYIVSTKDRMIQPALERAF-AKQINAKTTELPASHVPQQSRPADVAKVI 253


>gi|300313766|ref|YP_003777858.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score = 64.3 bits (155), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 107/238 (44%), Gaps = 31/238 (13%)

Query: 3   NFLLIHGAWQGKWVWPAVSAELTMRGHEVHSIDLPGSGEDATPLQQVSLSLYADTIVQAI 62
           + +L+HGA+     W  V A L  +G+ V ++  P             LS  AD +    
Sbjct: 23  DIVLVHGAFADGSSWSQVIALLQQKGYRVTAVQNP-------------LSSLADDVSATR 69

Query: 63  QAIGKR---VTLVGHSMGGIAVTAAAERAADSLARVIYLCAFVPGNGDSLASLSALAPSH 119
           + I ++   V LVGHS GG  +TAA    A  +  ++YL A  P +G S+A +  L   H
Sbjct: 70  RVIDRQPHEVLLVGHSWGGAVITAAGN--ASKVRGLVYLSALAPDSGQSVAQM--LQRLH 125

Query: 120 QPALDIQSDAVATRTAADSRVATFMQ-----DAPYAVAHWAAPQFQSQAIAPMMTPVEVS 174
            P   +Q DA       D+  A + Q      +P  V H AA Q Q  A A    P+  +
Sbjct: 126 APMSGMQPDADGLIWLDDA--AAYAQVMAGDVSPEQVRHLAAVQ-QPIAAAAFGEPLVHA 182

Query: 175 PERYGKVPKSYIVCTQDRAIDPVLQRVMAARSGCARIKELESGHSPFLSRPSATAEML 232
             R    P  Y++   D+A+   +QR +A   G AR ++L S H   +S P   A+ +
Sbjct: 183 AWR--DKPSWYLITEGDQALPTAVQRKLATLLG-ARTRQLISSHMSLVSHPQVVADFI 237


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.129    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 649,184
Number of extensions: 22650
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 3
Length of query: 239
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 157
Effective length of database: 1,231,600
Effective search space: 193361200
Effective search space used: 193361200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)