BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2167.p
         (336 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311762|ref|YP_003775854.1| biotin synthase [Herbaspirillum...   586   e-169

>gi|300311762|ref|YP_003775854.1| biotin synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 347

 Score =  586 bits (1511), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 292/347 (84%), Positives = 313/347 (90%), Gaps = 11/347 (3%)

Query: 1   MSQCTSALPTQASAPLHFHRPASAI---------DSR--ATEALFALPFLDLLYQAQSVH 49
           MS C SA   Q SAPLHFHRPA+A          D+R  A  ALF LPFLDLLYQAQ+VH
Sbjct: 1   MSHCPSAPAGQTSAPLHFHRPANAANAAHSTRADDARRDAVAALFELPFLDLLYQAQTVH 60

Query: 50  RQHHPANQVQLSSLLSIKTGGCAEDCGYCSQSAHHQDAGVPASKLMAVDDVVQAAQAARA 109
           RQHHPANQVQLSSLLSIKTGGCAEDCGYC+QSAHH++AGVPA KLMAVD+VVQAA+AAR 
Sbjct: 61  RQHHPANQVQLSSLLSIKTGGCAEDCGYCAQSAHHKEAGVPAGKLMAVDEVVQAARAARD 120

Query: 110 QGATRFCMGAAWRNPKQRDMAALTDMVTQVRALGLETCMTLGMLEQAQADALKEAGLDYY 169
           QGATRFCMGAAWRNPK+RDM ALT+MV+QVRALGLETCMTLGMLEQAQA+ALKEAGLDYY
Sbjct: 121 QGATRFCMGAAWRNPKERDMPALTEMVSQVRALGLETCMTLGMLEQAQAEALKEAGLDYY 180

Query: 170 NHNLDTAPDFYEQVISTRSYQDRLDTLQRVQQAGLNVCCGGIIGMGETRAQRAGLIAQLA 229
           NHNLDTAPDFY QVISTRSYQDRLDTL+RV  AGL+VCCGGIIGMGE+RAQRAGLIAQLA
Sbjct: 181 NHNLDTAPDFYGQVISTRSYQDRLDTLERVHLAGLSVCCGGIIGMGESRAQRAGLIAQLA 240

Query: 230 SLPVPPQSVPINHLVPIAGTPLQDVAPLDEFEFVRTVAVARITLPQAVIRLSAGRESMSE 289
           +LPVPPQSVPINHLVPIAGTPLQDV  LDEFEFVRTVAVARI LP AVIRLSAGRESMS+
Sbjct: 241 ALPVPPQSVPINHLVPIAGTPLQDVPALDEFEFVRTVAVARIALPHAVIRLSAGRESMSD 300

Query: 290 STQALCFAAGANSIFLGAKLLTTVNAPVSSDLELLARLGLQAAPAAA 336
           +TQALCFAAGANSIFLG+KLLTT NAPVSSDL+LLARLGLQA  A+A
Sbjct: 301 ATQALCFAAGANSIFLGSKLLTTPNAPVSSDLDLLARLGLQATAASA 347


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 927,210
Number of extensions: 36730
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 250
Effective length of database: 1,212,660
Effective search space: 303165000
Effective search space used: 303165000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)