BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2166.p
         (392 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311763|ref|YP_003775855.1| cytochrome P450 monooxygenase [...   531   e-152

>gi|300311763|ref|YP_003775855.1| cytochrome P450 monooxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 391

 Score =  531 bits (1368), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 293/394 (74%), Positives = 319/394 (80%), Gaps = 11/394 (2%)

Query: 1   MSVQWSAAHCGGAWVISGYEEVATALRDPRFSVRRAARWINSGLGQPATGAVQDAAQLRF 60
           M+VQWS AHCGGAWVISG+E+VA ALRDPRFSVRRAARWINSGLG         AA+ RF
Sbjct: 1   MAVQWSTAHCGGAWVISGHEQVAAALRDPRFSVRRAARWINSGLG---GKQADSAAERRF 57

Query: 61  KRLFSRSLLFLDGRAHRRLRGVLNPGFKPADLEAQRPAITRIAQQLIDAIVADPKAHQGF 120
           KRLFSRSLLFLDGRAHRRLRGVLNPGFKPA L  Q PAI  +AQQLID I+ DP++  GF
Sbjct: 58  KRLFSRSLLFLDGRAHRRLRGVLNPGFKPAQLALQAPAIEALAQQLIDDILRDPQSPHGF 117

Query: 121 DFIDRFARPLPALVIASLMGLPEQVPPQFIDWASDLATFIGSPTPEAQQTRAAQAAMAAL 180
           DFI RFARPLPALVIA LMGLP  VPP FIDWA+DLA FIGSPTP+A QT AAQ AM AL
Sbjct: 118 DFISRFARPLPALVIARLMGLPGAVPPAFIDWAADLAAFIGSPTPDAAQTLAAQHAMQAL 177

Query: 181 CDFFAQALEHP--QTLPADSLMQRLLQARQAQQLNQNELLAQCCTLLFAGYETTRNLLGN 238
           CDFF+  LE    Q LP  SL+ +LLQARQ  Q+NQ ELLAQC TLLFAGYETTRNLLGN
Sbjct: 178 CDFFSSTLEQEQGQALPPHSLLAQLLQARQQGQINQVELLAQCSTLLFAGYETTRNLLGN 237

Query: 239 GLLALLRHPEQWTALKAELHRGKPDLRPALREMLRYDSPVQYTGRRLLADVEMGGHSLRR 298
           GLLALLRHPEQW  LK+E H     LR A+REMLR+DSPVQYTGRRLLA V++ G +L R
Sbjct: 238 GLLALLRHPEQWRLLKSEPHW----LRSAIREMLRHDSPVQYTGRRLLAPVQLDGQTLAR 293

Query: 299 GELAILHIGQANHDHRRFAQPQCFDIRRDQGMHLSFGQGPHVCLGAALTQMEAEIAFTLL 358
           G+LAILHIG ANHD +R+ QPQ FDIRRDQGMHLSFGQGPHVCLGAALTQMEAEIAFT L
Sbjct: 294 GDLAILHIGLANHDAKRYHQPQDFDIRRDQGMHLSFGQGPHVCLGAALTQMEAEIAFTAL 353

Query: 359 MQRLPTLALDHHHAPPRWHSHAAYRALESLSLVF 392
           M+RLPTLALD   A P W  + AYRAL  L +VF
Sbjct: 354 MRRLPTLALD--TAAPVWQDNPAYRALARLPVVF 385


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,171,241
Number of extensions: 46101
Number of successful extensions: 188
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 305
Effective length of database: 1,207,925
Effective search space: 368417125
Effective search space used: 368417125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)