BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2165.p
         (386 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311764|ref|YP_003775856.1| 8-amino-7-oxononanoate (7-keto-...   534   e-153
gi|300311274|ref|YP_003775366.1| 5-aminolevulinic acid synthase ...   129   3e-31

>gi|300311764|ref|YP_003775856.1| 8-amino-7-oxononanoate
           (7-keto-8-aminopelargonate) synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 385

 Score =  534 bits (1376), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 295/378 (78%), Positives = 322/378 (85%)

Query: 1   MQDFTTDLATLASQSLLRTRRVVDGPQGPLLRVEGQDLLSFCSNDYLGLANHPEIVAAAM 60
           M DF   L  LA QSLLRTRR V   QGPLL VE +  LSFCSNDYLGLANHP I AAA+
Sbjct: 1   MHDFHQQLDELARQSLLRTRRTVSSAQGPLLTVEARPYLSFCSNDYLGLANHPAITAAAV 60

Query: 61  TALQQYGMGAAASALISGHSAAYETLEAELAAFVGLPAALCFSNGYMANLGVIGALVGAG 120
           TAL QYGMGAAASALISGHSAA+ETLE  LA F GLPAAL F +GYMAN+GVIGALVGAG
Sbjct: 61  TALGQYGMGAAASALISGHSAAHETLERALAEFTGLPAALGFGSGYMANMGVIGALVGAG 120

Query: 121 DTVIVDRLSHASLIDGARLSGASLKVFPHNDTARLEQVLARCPAGRKLVATDAVFSMDGD 180
           DTV+VDRLSHASLIDGARLSGASLKVFPHNDT RL+ VLARC +GRKLV TDAVFSMDGD
Sbjct: 121 DTVVVDRLSHASLIDGARLSGASLKVFPHNDTQRLDHVLARCGSGRKLVVTDAVFSMDGD 180

Query: 181 LAPLAELAAVCARHDAWLLVDDAHGLGVLGPQGQGSLALAQVQAPHVIYMGTLGKAAGVA 240
            APL+ELA +CARH AWLLVDDAHG GVLGPQG+GSLA A V+APHV+ MGTLGKAAGVA
Sbjct: 181 QAPLSELAEICARHGAWLLVDDAHGFGVLGPQGRGSLAHAGVRAPHVLCMGTLGKAAGVA 240

Query: 241 GAFVAGQRDVLAWIMQRARTYMFTTAHPPALAAATSASLGLIAKEDWRRQRLHSLAAQLR 300
           GAFVAG+RD+LAWIMQRARTYMF+TAHPPALAAA +ASL +IA ++WRR  L +L AQLR
Sbjct: 241 GAFVAGERDLLAWIMQRARTYMFSTAHPPALAAAATASLAVIAADEWRRTHLRALVAQLR 300

Query: 301 QGLAGLPWTLLPSSTAIQPLIVGDNAAARALAAALRARGLWVPAICPPTVPKATARLRIS 360
           +GLAGL W LLPS T IQPLI+GDNA ARAL   LR +G+WVPAICPPTVP+ TARLRIS
Sbjct: 301 KGLAGLSWQLLPSQTPIQPLIIGDNARARALMQQLREQGIWVPAICPPTVPRMTARLRIS 360

Query: 361 LSAAHTPEQVAQLVAALT 378
           LSA HT EQVAQL+ AL 
Sbjct: 361 LSALHTQEQVAQLIEALV 378


>gi|300311274|ref|YP_003775366.1| 5-aminolevulinic acid synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 423

 Score =  129 bits (325), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 172/392 (43%), Gaps = 16/392 (4%)

Query: 4   FTTDLATLASQSLLRTRRVVDGPQGPLLRVEGQDLLSFCSNDYLGLANHPEIVAAAMTAL 63
           F   +A+  ++  L    ++ G  G  +   G+  ++F   +YLG      ++ A + + 
Sbjct: 12  FQRFVASSVAEGFLHEPVIMQGMSGAEVSRNGRSYVNFSGINYLGWQQDARVLDAFVESA 71

Query: 64  QQYGMGAAASALISGHSAAYETLEAELAAFVGLPAALCFSNGYMANLGVIGAL------- 116
           ++YG+    S    G    +  LE  L+   G    L F++G +AN+G I A+       
Sbjct: 72  RRYGLSTGGSRATQGICEPHLRLENMLSTLHGKERTLSFASGMLANIGFINAMTAKFGFS 131

Query: 117 ----VGAGDTV-IVDRLSHASLIDGAR--LSGASLKVFPHNDTARLEQVLARCPAGRKLV 169
               +   D V I DR  H SL   A     G SL  F HND   L  VLA+    + +V
Sbjct: 132 SRSAIDNRDAVLIFDRECHWSLWKAASHLKFGESLLAFKHNDVTDLTAVLAKLGGRKAIV 191

Query: 170 ATDAVFSMDGDLAPLAELAAVCARHDAWLLVDDAHGLGVLG-PQGQGSLALAQVQAPHVI 228
             ++++S DG +AP+ E+  VC R DA   +DDA+G  V G PQ         ++    I
Sbjct: 192 VFESLYSSDGSVAPIGEILDVCQRFDALSYIDDANGFMVYGSPQRPFHEQFRHMRRADFI 251

Query: 229 YMGTLGKAAGVAGAFVAGQRDVLAWIMQRARTYMFTTAHPPALAAATSASLGLIAKEDWR 288
            M +L K+ G+ G  ++G  + +      + T +FT A  P  A      +  +    W 
Sbjct: 252 -MVSLSKSVGLEGGAISGSAEFIDAFEVLSGTSIFTAAIQPPTADLAVFIIERLRANPWI 310

Query: 289 RQRLHSLAAQLRQGLAGLPWTLLPSSTAIQPLIVGDNAAARALAAALRARGLWVPAICPP 348
            +     +A  R  L      L  +++ I  +++G +  A  +  AL  +G  VP    P
Sbjct: 311 MEDYLDRSAMFRLKLQASGLRLNDTASYITSVMIGRDDKAEQVRQALEQQGFCVPIFRYP 370

Query: 349 TVPKATARLRISLSAAHTPEQVAQLVAALTAL 380
            V    A +R+ L   HT  Q+ + VA+L  L
Sbjct: 371 AVKPNQALMRLILHRLHTEPQIDRFVASLKDL 402


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,029,782
Number of extensions: 38902
Number of successful extensions: 218
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 2
Length of query: 386
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 299
Effective length of database: 1,207,925
Effective search space: 361169575
Effective search space used: 361169575
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)