BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2163.p
         (227 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311766|ref|YP_003775858.1| dethiobiotin synthetase [Herbas...   297   4e-82

>gi|300311766|ref|YP_003775858.1| dethiobiotin synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 243

 Score =  297 bits (761), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 154/213 (72%), Positives = 171/213 (80%), Gaps = 1/213 (0%)

Query: 4   RSYFVTGTDTGVGKTLVASALVHLHAARGVRAAGMKPVASGAFLHPDGQWCNDDVQALQA 63
           +  FVTGTDTGVGKTLVASALVHLHAA G+R  GMKPVASGAF H   +WCN+DV ALQA
Sbjct: 17  KGIFVTGTDTGVGKTLVASALVHLHAAHGLRCVGMKPVASGAF-HDGQRWCNEDVLALQA 75

Query: 64  AASVALPPHLVNPYLLRQATAPHIAARAEGVRIELEHLVQCHAQLLALCDVLIVEGAGGF 123
            A+V +PPH VNPYLLR+ATAPHIAA  EGV IELEHL  CH  L A  D +IVEGAGG 
Sbjct: 76  QANVQVPPHWVNPYLLRRATAPHIAAAEEGVTIELEHLAACHGHLAAASDCVIVEGAGGL 135

Query: 124 MVPLDERYHSDDLVARLDLPVVLVVGIRLGCINHALLTQQAIRWRGLRLAGWVANRIDAE 183
           MVPLD R+++DDLVARL LPVVLVVG+RLGCINHALLTQQAI  RGL L GWVAN ID  
Sbjct: 136 MVPLDARHNTDDLVARLGLPVVLVVGMRLGCINHALLTQQAIAARGLPLLGWVANEIDPA 195

Query: 184 EDQADAMIDTLVQRLQAPLLGRLPWAPGMTAAQ 216
           E   DAM+++L  RL APLLGRLPW PGM+A +
Sbjct: 196 EACMDAMVESLQARLHAPLLGRLPWQPGMSAQE 228


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 693,184
Number of extensions: 27434
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 2
Length of query: 227
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,231,600
Effective search space: 178582000
Effective search space used: 178582000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 129 (54.3 bits)