BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2161.p (233 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 350 5e-98 gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 200 7e-53 gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [He... 193 1e-50 gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 188 3e-49 gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPa... 186 2e-48 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 350 bits (899), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 178/233 (76%), Positives = 197/233 (84%) Query: 1 MSAPLLQVEGLNASYGRAHILFDLSLQVGRGEVVALMGRNGAGKSTTLKSLMGLLEGGSG 60 MS LLQV+GL+ Y AHILF L L++ GEVVALMGRNGAGKSTTLK+LMGLLE G Sbjct: 1 MSQCLLQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQG 60 Query: 61 TITFGGRDITRLAPYQRARLGLGFVPEDRRIFTELTVLQNLETGRQPMREGAPAWTPAAL 120 I GRDI +LAP+QRARLGLG+VPEDRRIFTEL+VL+NLETGRQP R GAP WTP AL Sbjct: 61 QIRLAGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPHWTPQAL 120 Query: 121 FELFPNLGAMPHRPGGRMSGGEQQMLTIARTLMGNPHVLLLDEPSEGVAPVIVEQMAAMI 180 FELFPNLGAMP R GGRMSGGEQQMLTIARTLMGNP +LLLDEPSEGVAPVIVEQMAAMI Sbjct: 121 FELFPNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMI 180 Query: 181 QQLKQRGMSILLCEQNTHFAGMVSDRAYLLELGRIVHHGSVEQVQAHQQQSGL 233 Q+LK+ G++ILLCEQN HFA +V DR YLL+ GRIV G+ +QAHQQQSGL Sbjct: 181 QELKRSGIAILLCEQNLHFASLVCDRGYLLDQGRIVAAGTPASLQAHQQQSGL 233 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 200 bits (509), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 107/216 (49%), Positives = 145/216 (67%), Gaps = 4/216 (1%) Query: 5 LLQVEGLNASYGRAHILFDLSLQVGRGEVVALMGRNGAGKSTTLKSLMGLLEGGSGTITF 64 +LQVE ++ YG++HIL +SLQV GEVV L+GRNGAGK+TTLKS++G++ G + F Sbjct: 2 ILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVLF 61 Query: 65 GGRDITRLAPYQRARLGLGFVPEDRRIFTELTVLQNLETGRQPMREGAPAWTPAALFELF 124 G+ I+ L Y+ A G+ VPE R IF LTV +NL + AW ++ +F Sbjct: 62 EGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAARK----ESAWGLEEIYAIF 117 Query: 125 PNLGAMPHRPGGRMSGGEQQMLTIARTLMGNPHVLLLDEPSEGVAPVIVEQMAAMIQQLK 184 P L GG++SGGEQQML IAR LM +P VL+LDEP EG+APVIV+++ A I+Q+K Sbjct: 118 PRLKERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIK 177 Query: 185 QRGMSILLCEQNTHFAGMVSDRAYLLELGRIVHHGS 220 GMSI+L EQN ++DR Y++E GRIV+HGS Sbjct: 178 ATGMSIILVEQNLEVCTQLADRHYIVEQGRIVYHGS 213 >gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 232 Score = 193 bits (490), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 100/230 (43%), Positives = 145/230 (63%), Gaps = 1/230 (0%) Query: 5 LLQVEGLNASYGRAHILFDLSLQVGRGEVVALMGRNGAGKSTTLKSLMGLLEGGSGTITF 64 +LQV LN YG AH L +SL V +G+V++L+GRNG GK+T LK LMG+L G + F Sbjct: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 Query: 65 GGRDITRLAPYQRARLGLGFVPEDRRIFTELTVLQNLETGRQPMREGAPAWTPAALFELF 124 G DIT+L P+QRA+LG+ +VP+ R IF LTV +N+ G + + ++ELF Sbjct: 61 EGHDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASSIKGEVYELF 120 Query: 125 PNLGAMPHRPGGRMSGGEQQMLTIARTLMGNPHVLLLDEPSEGVAPVIVEQMAAMIQQLK 184 P L M HR GG +SGG+QQ L IAR L+ P +++LDEP+EG+ P I++ + +I L+ Sbjct: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 Query: 185 QRG-MSILLCEQNTHFAGMVSDRAYLLELGRIVHHGSVEQVQAHQQQSGL 233 QRG + ILLCEQ FA ++D ++ G +V G+ +Q+ + L Sbjct: 181 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHL 230 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 188 bits (478), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 102/224 (45%), Positives = 142/224 (63%), Gaps = 1/224 (0%) Query: 5 LLQVEGLNASYGRAHILFDLSLQVGRGEVVALMGRNGAGKSTTLKSLMGLLEGGSGTITF 64 LL V GL A YG + +L + L V RGE+V+++GRNGAG+ST LK+LMGLL G F Sbjct: 7 LLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLLPS-RGDCRF 65 Query: 65 GGRDITRLAPYQRARLGLGFVPEDRRIFTELTVLQNLETGRQPMREGAPAWTPAALFELF 124 GRDI+ L + ARLG+G+VPE R +F L+V QNL GR+P + W + LF Sbjct: 66 EGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGRGWCEDDIHALF 125 Query: 125 PNLGAMPHRPGGRMSGGEQQMLTIARTLMGNPHVLLLDEPSEGVAPVIVEQMAAMIQQLK 184 P L +SGGEQQML + R L+GNP +LL+DEP+EG+AP +VEQ+A +Q+L+ Sbjct: 126 PALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVARALQELR 185 Query: 185 QRGMSILLCEQNTHFAGMVSDRAYLLELGRIVHHGSVEQVQAHQ 228 RG+++LL EQ A +S R Y++ G +V G+ + A + Sbjct: 186 TRGVAVLLVEQKQALALELSQRVYVMGRGEMVFEGTPTGLSAQE 229 >gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 186 bits (471), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 102/231 (44%), Positives = 151/231 (65%), Gaps = 6/231 (2%) Query: 2 SAPL-LQVEGLNASYGRAHILFDLSLQVGRGEVVALMGRNGAGKSTTLKSLMGLLEGGSG 60 SAPL LQ+ L + YG +HIL +++L V +GEVV L+GRNGAG++TTL+S+MGL+ G Sbjct: 7 SAPLVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKG 66 Query: 61 TITFGGRDITRLAPYQRARLGLGFVPEDRRIFTELTVLQNLETGRQP--MREGAPAWTPA 118 +I G++ LA ++ A G+G+ PE+R IF+ L+ +NL P + + + Sbjct: 67 SIKINGQETINLATHKIAHHGVGYCPEERGIFSSLSAEENLML---PPFVSKTDKGMSID 123 Query: 119 ALFELFPNLGAMPHRPGGRMSGGEQQMLTIARTLMGNPHVLLLDEPSEGVAPVIVEQMAA 178 ++E+FPNL + G R+SGGEQQML +AR L +LLLDE SEG+APVIV+ +A Sbjct: 124 EIYEMFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALAR 183 Query: 179 MIQQLKQRGMSILLCEQNTHFAGMVSDRAYLLELGRIVHHGSVEQVQAHQQ 229 MI LK +G +I++ EQN FA ++DR Y++E G+IV + Q++A Q Sbjct: 184 MITTLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQ 234 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 793,323 Number of extensions: 36360 Number of successful extensions: 492 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 323 Number of HSP's successfully gapped: 140 Length of query: 233 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 151 Effective length of database: 1,231,600 Effective search space: 185971600 Effective search space used: 185971600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)