BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2160.p (256 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC t... 414 e-117 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 189 2e-49 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 179 2e-46 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 174 5e-45 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 174 7e-45 >gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 414 bits (1065), Expect = e-117, Method: Compositional matrix adjust. Identities = 205/250 (82%), Positives = 225/250 (90%) Query: 1 MSLLQVQTISKSFGGVAALDAVSFDLPAGQMLALIGPNGAGKSTCFNVINGQLRPDAGAV 60 MSLLQVQ +SKSFGGVAAL+ +SF LPAGQMLALIGPNGAGKSTCFN+INGQLRPD G V Sbjct: 1 MSLLQVQQLSKSFGGVAALEELSFALPAGQMLALIGPNGAGKSTCFNLINGQLRPDRGEV 60 Query: 61 LLDGHDIAGLDARRIWRRGVGRTFQVSAAFASLTVLENVQAALLSHRRRLWQLWRPAAHC 120 LLDG I GLDARRIWRRGVGRTFQVSAAF+S+TVL++VQAALLSH RRLWQLWRPA Sbjct: 61 LLDGQSITGLDARRIWRRGVGRTFQVSAAFSSMTVLQSVQAALLSHHRRLWQLWRPADSL 120 Query: 121 LRQEAMHLLDQVGMSAQAERACGVLAYGDIKRVELAMALSNDPRLLLMDEPTAGMAARER 180 RQ+AM LLDQVGM+AQA+RAC VLAYGDIKRVELAMALSN PRLLLMDEPTAGMA +ER Sbjct: 121 FRQQAMELLDQVGMAAQAQRACAVLAYGDIKRVELAMALSNAPRLLLMDEPTAGMATQER 180 Query: 181 QELMALTRRLVSQRGLSVLFTEHSMDVVFAFADRIIVLARGQVIAQGDAQDVRQDARVRE 240 Q LMALTRRLV++RG++VLFTEHSMDVVFA ADRI+VLARGQ++A G VR DARVRE Sbjct: 181 QALMALTRRLVNERGIAVLFTEHSMDVVFAHADRILVLARGQLVADGAPAVVRADARVRE 240 Query: 241 VYFGSGASFG 250 +YFGSGASFG Sbjct: 241 LYFGSGASFG 250 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 189 bits (479), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 17/256 (6%) Query: 2 SLLQVQTISKSFGGVAALDAVSFDLPAGQMLALIGPNGAGKSTCFNVINGQLRPDAGAVL 61 ++L+V +S FGG+ A+D VS + ++ A+IGPNGAGK+T FN I+G RP +G ++ Sbjct: 7 TMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEIM 66 Query: 62 LDGHDIAGLDARRIWRRGVGRTFQVSAAFASLTVLEN--------VQAALLSHRRRLWQL 113 LDG IA + ++ ++G+ RTFQ F S+TV+EN V LLS L Sbjct: 67 LDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLS-----GLL 121 Query: 114 WRPAAHCLRQEAM----HLLDQVGMSAQAERACGVLAYGDIKRVELAMALSNDPRLLLMD 169 PA QEA+ + LDQ+G++A A R G L+YG +RVE+A + PRLLL+D Sbjct: 122 KTPAYRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLD 181 Query: 170 EPTAGMAARERQELMALTRRLVSQRGLSVLFTEHSMDVVFAFADRIIVLARGQVIAQGDA 229 EP AG+ +E+QEL L RL + G++VL EH M ++ +DRI+V+ G+ I G Sbjct: 182 EPAAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTP 241 Query: 230 QDVRQDARVREVYFGS 245 + VR D RV + Y G Sbjct: 242 EQVRSDERVIKAYLGE 257 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 179 bits (455), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 96/250 (38%), Positives = 141/250 (56%), Gaps = 8/250 (3%) Query: 3 LLQVQTISKSFGGVAALDAVSFDLPAGQMLALIGPNGAGKSTCFNVINGQLRPDAGAVLL 62 LLQ+ ISK+FGG+ L V+F++ G++ LIGPNGAGK+T FN+I G LR +G++ Sbjct: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 Query: 63 DGHDIAGLDARRIWRRGVGRTFQVSAAFASLTVLENVQAALLSHRRR-----LWQL--WR 115 + DI + +I RG+ RTFQ F +T+LENV + H L L +R Sbjct: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFR 121 Query: 116 PAAHCLRQEAMHLLDQVGMSAQAERACGVLAYGDIKRVELAMALSNDPRLLLMDEPTAGM 175 A R+ A+ LL V + +A L+YG+ +++E A AL+ P+LLL+DEP AGM Sbjct: 122 NAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 Query: 176 AARERQELMALTRRLVSQRGLSVLFTEHSMDVVFAFADRIIVLARGQVIAQGDAQDVRQD 235 E+ ELM+ + QRG ++ EH M V +RI VL G++IA+G ++ + Sbjct: 182 NPAEKTELMSEIVN-IKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN 240 Query: 236 ARVREVYFGS 245 V E Y G Sbjct: 241 QEVIEAYLGK 250 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 174 bits (442), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 98/254 (38%), Positives = 146/254 (57%), Gaps = 12/254 (4%) Query: 2 SLLQVQTISKSFGGVAALDAVSFDLPAGQMLALIGPNGAGKSTCFNVINGQLRPDAGAVL 61 +LL+++ +SK FGG+ AL+ V + GQ+ LIGPNGAGK+T FNVI G +PD G Sbjct: 4 TLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFE 63 Query: 62 LDGHDIAGLDARRIWRRGVGRTFQVSAAFASLTVLENVQAALLSHRRRLWQLW------- 114 LDG + + + G+ RTFQ F +TVLENV H R ++ Sbjct: 64 LDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVG--CHVRTKQNVFGAVFRHK 121 Query: 115 --RPAAHCLRQEAMHLLDQVGMSAQAERACGVLAYGDIKRVELAMALSNDPRLLLMDEPT 172 R +R+++ LLD VG+ A+R L+YGD +R+E+A AL+ DP+LL +DEP Sbjct: 122 AAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPA 181 Query: 173 AGMAARERQELMALTRRLVSQRGLSVLFTEHSMDVVFAFADRIIVLARGQVIAQGDAQDV 232 AGM A E+ L L ++ ++ G ++L EH + ++ +RI VL G+ IA+G DV Sbjct: 182 AGMNATEKLGLRELLVKIQAE-GKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADV 240 Query: 233 RQDARVREVYFGSG 246 +++ V E Y G+G Sbjct: 241 QKNPAVIEAYLGAG 254 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 174 bits (441), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 98/254 (38%), Positives = 146/254 (57%), Gaps = 12/254 (4%) Query: 2 SLLQVQTISKSFGGVAALDAVSFDLPAGQMLALIGPNGAGKSTCFNVINGQLRPDAGAVL 61 +LL+++ +SK FGG+ AL+ V + GQ+ LIGPNGAGK+T FNVI G +PD G Sbjct: 4 TLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFE 63 Query: 62 LDGHDIAGLDARRIWRRGVGRTFQVSAAFASLTVLENVQAALLSHRRRLWQLW------- 114 LDG + + + G+ RTFQ F +TVLENV H R ++ Sbjct: 64 LDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVG--CHVRTRQNVFGAVFRHK 121 Query: 115 --RPAAHCLRQEAMHLLDQVGMSAQAERACGVLAYGDIKRVELAMALSNDPRLLLMDEPT 172 R +R+++ LLD VG+ A+R L+YGD +R+E+A AL+ DP+LL +DEP Sbjct: 122 AAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPA 181 Query: 173 AGMAARERQELMALTRRLVSQRGLSVLFTEHSMDVVFAFADRIIVLARGQVIAQGDAQDV 232 AGM A E+ L L ++ ++ G ++L EH + ++ +RI VL G+ IA+G DV Sbjct: 182 AGMNATEKLGLRELLVKIQAE-GKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADV 240 Query: 233 RQDARVREVYFGSG 246 +++ V E Y G+G Sbjct: 241 QKNPAVIEAYLGAG 254 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 808,213 Number of extensions: 33957 Number of successful extensions: 573 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 369 Number of HSP's successfully gapped: 138 Length of query: 256 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 173 Effective length of database: 1,226,865 Effective search space: 212247645 Effective search space used: 212247645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)