BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2155.p
         (283 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311775|ref|YP_003775867.1| surfeit 1 protein [Herbaspirill...   407   e-115
gi|300313441|ref|YP_003777533.1| transmembrane cytochrome oxidas...    59   5e-10

>gi|300311775|ref|YP_003775867.1| surfeit 1 protein [Herbaspirillum
           seropedicae SmR1]
          Length = 285

 Score =  407 bits (1047), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 237/282 (84%), Positives = 256/282 (90%), Gaps = 2/282 (0%)

Query: 1   MSPTPPHGVTQGKESGTASAVPVSRTKASLLLLTLLAGFFFLVFAALGTWQVYRLQWKLD 60
           MS TP +GV QGKESG A AVPVSRTKASLLLLTLLAGFFFLVFAALG+WQVYRLQWKLD
Sbjct: 1   MSQTPINGVKQGKESGAAQAVPVSRTKASLLLLTLLAGFFFLVFAALGSWQVYRLQWKLD 60

Query: 61  LIAKVDARVHAAPTAPPGPQDWPQVSAERDEYKRVDLRGRYLYSKTVAVQASTDLGSGSW 120
           LIAKVDARVHAAP APPGP  WPQVSA+RDEYKRV L GRYLYSKTVAVQASTDLGSG+W
Sbjct: 61  LIAKVDARVHAAPVAPPGPALWPQVSAQRDEYKRVVLTGRYLYSKTVAVQASTDLGSGAW 120

Query: 121 LLTPLQMADGVVVLVNRGFVSTSPIKLAELHLPDAPADQATEVTGLLRMSEQGGGFLRSN 180
           LLTPLQ+ADG VVLVNRGFV  SP+KLAE  L DAPA Q  EVTGLLRMSE  GGFLRSN
Sbjct: 121 LLTPLQLADGEVVLVNRGFVGVSPLKLAEASLADAPAGQNAEVTGLLRMSEPKGGFLRSN 180

Query: 181 DAAQNRWYSRDVKAIAQARGLEPGKVAPYFIDADQASAQADAAVAPDAQKPVGGLTVIAF 240
           DAAQ+RWYSRDV+AIAQA+GL    VAPYF+DAD+ASA+A+AAVAPDAQKPVGGLTVIAF
Sbjct: 181 DAAQSRWYSRDVQAIAQAKGLT--SVAPYFVDADKASAEANAAVAPDAQKPVGGLTVIAF 238

Query: 241 HNSHLVYALTWYALALMSLGAGYWVIRDERRWRQRIQDAQAK 282
           HNSHL+YALTWYALALMSLGAGYW+IRDERRWR+RI+ AQ++
Sbjct: 239 HNSHLIYALTWYALALMSLGAGYWLIRDERRWRERIRQAQSQ 280


>gi|300313441|ref|YP_003777533.1| transmembrane cytochrome oxidase
           complex biogenesis factor transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score = 58.9 bits (141), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 112/235 (47%), Gaps = 29/235 (12%)

Query: 46  ALGTWQVYRLQWKLDLIAKVDARVHAAPTAPPGPQDWPQVSAERDEYKRVDLRGRYLYSK 105
           ALG WQ +R Q K  L A++ AR   AP +   P D     + +DE+++V LRG+++   
Sbjct: 24  ALGQWQTHRAQEKQALQARMQARAAEAPLSALPPDD----QSLQDEFRQVSLRGQFIPQW 79

Query: 106 TVAVQASTDLGSGSWLLTPLQMADGV--VVLVNRGFVSTSPIKLAELHLPDAPADQA-TE 162
           T+ ++     G+  + +  L   +G    V+V RG+     +      +P +P  Q  TE
Sbjct: 80  TLYLENRPHQGAVGFHVLTLFKPEGSAQAVVVARGWAPRDAVD--RTRVPQSPPAQGTTE 137

Query: 163 VTGLLRMSEQGGGFLRSNDAAQNR----WYSRDVKAIAQARGLEPGKVAPYFIDADQASA 218
           V GLLR     G  L+   A   R      + D+ A+AQA G+    ++ + I  +Q   
Sbjct: 138 VQGLLR--RDAGHVLQLGQADAPRPGAILQNLDLAALAQASGM---PLSGFVI--EQGGD 190

Query: 219 QADAAVAPDAQKPVGGLTVIAFHNSHLVYALTWYALALMSLGAGYWVIRDERRWR 273
            +D  +  D   P  G+      + H  YA+ WYALA M++   ++++   RR R
Sbjct: 191 VSDGLLR-DWPAPSLGI------DRHRGYAVQWYALAAMAV--LFFIVTGFRRGR 236


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 856,893
Number of extensions: 31584
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 2
Length of query: 283
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 199
Effective length of database: 1,222,130
Effective search space: 243203870
Effective search space used: 243203870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)