BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2151.p
         (310 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311779|ref|YP_003775871.1| cytochrome o ubiquinol oxidase ...   573   e-165

>gi|300311779|ref|YP_003775871.1| cytochrome o ubiquinol oxidase
           subunit II protein [Herbaspirillum seropedicae SmR1]
          Length = 310

 Score =  573 bits (1478), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 301/310 (97%), Positives = 308/310 (99%)

Query: 1   MVSQILRRGLLLLPAILLAGCNTVVMNPSGDIANQQARLIIISTALMLLIIVPVIILTLL 60
           MVSQILRRGLLLLPA+LLAGCNTVVMNPSGDIANQQARLIIISTALMLLIIVPVIILTLL
Sbjct: 1   MVSQILRRGLLLLPALLLAGCNTVVMNPSGDIANQQARLIIISTALMLLIIVPVIILTLL 60

Query: 61  FAWRYRKSNTSAPYEPDWDHSTRLELIIWGAPLLIIIALGLLTWITTHTLDPYRPLSRID 120
           FAWRYRKSNTSAPYEPDWDHSTRLEL+IWGAPLLIIIALGLLTWITTHTLDPYRPLSRID
Sbjct: 61  FAWRYRKSNTSAPYEPDWDHSTRLELVIWGAPLLIIIALGLLTWITTHTLDPYRPLSRID 120

Query: 121 AERPLAPQVKPLVVEVVALDWKWLFIYPEQGIATVNELAAPVDVPIEFKITASNVMNSFY 180
           AERPL+PQVKPLVVEVVALDWKWLFIYPEQGIATVNELAAPVDVPI+FKITAS+VMNSFY
Sbjct: 121 AERPLSPQVKPLVVEVVALDWKWLFIYPEQGIATVNELAAPVDVPIQFKITASSVMNSFY 180

Query: 181 IPALAGQIYAMPSMETKLHAVINKAGEYDGFSANYSGAGFSHMRFKFHGLDQAGFDAWVQ 240
           IPALAGQIYAMP METKLHAVINKAGEY+GFSANYSGAGFSHMRFKFHGLDQAGFDAWVQ
Sbjct: 181 IPALAGQIYAMPGMETKLHAVINKAGEYEGFSANYSGAGFSHMRFKFHGLDQAGFDAWVQ 240

Query: 241 KAKAGAGKLDRAEYLKLEQPSEREPARLIGSIEPNLFHAIVNRCVAPNTVCMDKMMATDL 300
           KAKAG+GKLDRAEYLKLEQPSEREPARLIGS EPNLFHAIVNRCVAPNTVCMDKMMATDL
Sbjct: 241 KAKAGSGKLDRAEYLKLEQPSEREPARLIGSTEPNLFHAIVNRCVAPNTVCMDKMMATDL 300

Query: 301 NVKPGQQKAE 310
           NVKPGQQKAE
Sbjct: 301 NVKPGQQKAE 310


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 814,255
Number of extensions: 31326
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 310
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 225
Effective length of database: 1,217,395
Effective search space: 273913875
Effective search space used: 273913875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)