BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2149.p
         (249 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310247|ref|YP_003774339.1| hypothetical protein Hsero_0914...   115   3e-27

>gi|300310247|ref|YP_003774339.1| hypothetical protein Hsero_0914
           [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score =  115 bits (288), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/208 (35%), Positives = 105/208 (50%), Gaps = 9/208 (4%)

Query: 40  MKLEHWLVATGDKEGSFRYPVFEGGVPGTSALAYYREFQRNHESDDPRYLCFWNGQLQKG 99
           M LE W       + + R   F+   P  +A+A + E ++   S+  R L  WNG+   G
Sbjct: 36  MPLEDWCPPADTPDNARRNVAFDKNGPSPAAVAIFHEEEKADPSEKFRILGVWNGKEDDG 95

Query: 100 ---VRASFTDQYNHLHDRPEIIWLTVGHMERWPNPSSIVDALKESAKLFAPRAMFVKPAS 156
              +    +   NH     E+    V  +E+  N   I++ L E   +F    + V P  
Sbjct: 96  GAVLLHKLSIASNHSRSSFELNSKGVQALEKKENIVQIINTLLE---IFPAPFIQVSPPP 152

Query: 157 YT---PVFFDKPCVAWMLYLPLQLSTMQVPEAARLEPVQDASGRLIGTIIISVVDAIFDI 213
           Y     VF D P V WMLYLP  L+  QVPEA  L PV D   +  GTI++SV +  F +
Sbjct: 153 YATRHAVFEDHPGVGWMLYLPEILTPAQVPEAPELIPVLDKDNKRKGTIVVSVPNETFSV 212

Query: 214 GNTDHVRIAHDIEVRLTDQDLLPRYPDL 241
            N +HV++A+ IE+RL DQDLLPR+ +L
Sbjct: 213 KNKEHVKVANAIEIRLADQDLLPRFSNL 240


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 787,142
Number of extensions: 32634
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,226,865
Effective search space: 203659590
Effective search space used: 203659590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)