BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2145.p (138 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310251|ref|YP_003774343.1| hypothetical protein Hsero_0918... 159 9e-41 gi|300310095|ref|YP_003774187.1| hypothetical protein Hsero_0760... 81 3e-17 gi|300312708|ref|YP_003776800.1| hypothetical protein Hsero_3411... 80 5e-17 gi|300312023|ref|YP_003776115.1| hypothetical protein Hsero_2711... 68 3e-13 gi|300310277|ref|YP_003774369.1| hypothetical protein Hsero_0944... 66 1e-12 >gi|300310251|ref|YP_003774343.1| hypothetical protein Hsero_0918 [Herbaspirillum seropedicae SmR1] Length = 137 Score = 159 bits (401), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 82/137 (59%), Positives = 102/137 (74%), Gaps = 1/137 (0%) Query: 1 MGQAFIVVGDKTSHGGTVITGDQTFLVHGKAVARVGDLTSCPKCKGIFPITSGAGDMKSR 60 M + FI VGDKTSHGGTVI+GDQ+FL+HGKAVA +GDLT+CP+CKG F ITSGA DM + Sbjct: 1 MSRPFITVGDKTSHGGTVISGDQSFLIHGKAVASIGDLTTCPRCKGTFAITSGAEDMITN 60 Query: 61 GQAPARDGDRTACGATLIASQGVATHSEGQAAGQAAPAEAAASGNDRMVSPASSSSSSIC 120 G+APARDGDRTACGA LIA+Q + TH+ Q G A AA + N +PA+ S IC Sbjct: 61 GKAPARDGDRTACGAILIATQALTTHAAQQEVGSTA-GTAADAANLAKANPAAPVESGIC 119 Query: 121 LPCLAAAAQSGQSLMVR 137 L CL AA++G +++VR Sbjct: 120 LSCLMNAAKAGATMIVR 136 >gi|300310095|ref|YP_003774187.1| hypothetical protein Hsero_0760 [Herbaspirillum seropedicae SmR1] Length = 85 Score = 80.9 bits (198), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/81 (59%), Positives = 52/81 (64%), Gaps = 1/81 (1%) Query: 1 MGQAFIVVGDKTSHGGTVITGDQTFLVHGKAVARVGDLTSCPKCKGIFPITSGAGDMKSR 60 M Q IV+GDKTSHGGTVI +V GK VARVGD SCP+ G I SG M Sbjct: 1 MSQPVIVLGDKTSHGGTVIQASGVTMVGGKQVARVGDKVSCPR-HGSTTIASGDPTMIID 59 Query: 61 GQAPARDGDRTACGATLIASQ 81 G ARDGD+TACGA LIASQ Sbjct: 60 GAPVARDGDKTACGAVLIASQ 80 >gi|300312708|ref|YP_003776800.1| hypothetical protein Hsero_3411 [Herbaspirillum seropedicae SmR1] Length = 87 Score = 80.5 bits (197), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 44/81 (54%), Positives = 52/81 (64%), Gaps = 2/81 (2%) Query: 2 GQAFIVVGDKTSHGGTVITGDQTFLVHGKAVARVGDLTSCPKCKGIFPITSGAGD--MKS 59 G+A I +GDKTSHGG VI+ T GK VA GD+T+CPKCKG F I G G+ K Sbjct: 6 GRAVIRLGDKTSHGGEVISASDTLKAMGKGVALEGDMTTCPKCKGQFAIQPGGGNSTRKH 65 Query: 60 RGQAPARDGDRTACGATLIAS 80 G+ A GD T CGA+LIAS Sbjct: 66 HGKQVAYHGDTTTCGASLIAS 86 >gi|300312023|ref|YP_003776115.1| hypothetical protein Hsero_2711 [Herbaspirillum seropedicae SmR1] Length = 173 Score = 67.8 bits (164), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 58/114 (50%), Gaps = 1/114 (0%) Query: 1 MGQAFIVVGDKTSHGGTVITGDQTFLVHGKAVARVGDLTSCPKCKGIFPITSGAGDMKSR 60 M A I GD TSHGGTV+ G +F V G A VG + CP+CKG + I G + Sbjct: 1 MSSAIIRKGDSTSHGGTVLEGLVSFNVLGLPAALVGHMVYCPRCKGSYAIVEGVRHFRCG 60 Query: 61 GQAPARDGDRTACGATLIASQGVATHSEGQAAGQAAPAEAAASGNDRMVSPASS 114 G A G +TACGA L ASQ A A+ AAP A + ++ ++ S Sbjct: 61 GNPVAVAGMKTACGAELQASQS-AFLIGASASPVAAPLRATEASDEEVIEHWYS 113 >gi|300310277|ref|YP_003774369.1| hypothetical protein Hsero_0944 [Herbaspirillum seropedicae SmR1] Length = 88 Score = 65.9 bits (159), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/87 (45%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 1 MGQAFIVVGDKTSHGGTVITGDQTFLVHGKAVARVGDLTSCP-KCKGIFPITSGAGDMKS 59 M A I +GD TSHGG VIT T L+ G VARVGD CP G+ I GA + Sbjct: 1 MAAAIIRLGDPTSHGGRVITASTTHLIGGLGVARVGDKVMCPLPGHGVNAIIEGAPSFQI 60 Query: 60 RGQAPARDGDRTACGATLIASQGVATH 86 G+ A G R ACG TL+++ ATH Sbjct: 61 DGRNVALHGQRAACGCTLVSTLATATH 87 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.126 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 322,535 Number of extensions: 10769 Number of successful extensions: 61 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 50 Number of HSP's successfully gapped: 9 Length of query: 138 Length of database: 1,619,870 Length adjustment: 76 Effective length of query: 62 Effective length of database: 1,260,010 Effective search space: 78120620 Effective search space used: 78120620 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)