BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2144.p
         (368 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311781|ref|YP_003775873.1| hypothetical protein Hsero_2466...   680   0.0  

>gi|300311781|ref|YP_003775873.1| hypothetical protein Hsero_2466
           [Herbaspirillum seropedicae SmR1]
          Length = 370

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/365 (88%), Positives = 337/365 (92%), Gaps = 3/365 (0%)

Query: 1   VKTFHCDNCGLQVFFENTVCGNCGWMLGYQPELQAIASFLPLEPDAPPAQEVAAEPGPGR 60
           + TFHCDNCG QVFFENTVCG+CGWMLGYQPELQ+I SF  LE    PA E  AEPGPGR
Sbjct: 1   MNTFHCDNCGAQVFFENTVCGSCGWMLGYQPELQSITSFSALET---PAAESGAEPGPGR 57

Query: 61  WRSVRPDNEGRVFKQCLNYWRENICNWMLDAREAHELCASCRLTRVIPTLDEGNNRVLWS 120
           WRSVRP+NEGRVFKQCLNYWRENICNWMLD +E HELCASCRLTRVIPTLDEGNNRVLWS
Sbjct: 58  WRSVRPENEGRVFKQCLNYWRENICNWMLDEQETHELCASCRLTRVIPTLDEGNNRVLWS 117

Query: 121 RLETAKRRLLHSLWTLRLQPVPKMEDEETGLAFEFLQDQPHGERVLTGHADGVITINIAE 180
           RLETAKRRLLH+LWTLRLQP PKMEDE++GLAFEFLQDQPHGERVLTGHADGVITINIAE
Sbjct: 118 RLETAKRRLLHTLWTLRLQPAPKMEDEQSGLAFEFLQDQPHGERVLTGHADGVITINIAE 177

Query: 181 ADPAYREQAREQMAEPYRTLLGHFRHESGHYYFDRLVAPSEWLAPFRQKFGDERKDYGAA 240
           ADPAYREQAREQMAEPYRTLLGHFRHESGHYYFDRLVA S WL PFRQ+FGDER+DYGAA
Sbjct: 178 ADPAYREQAREQMAEPYRTLLGHFRHESGHYYFDRLVAGSAWLEPFRQRFGDEREDYGAA 237

Query: 241 LKTHYENGPRPDWEENFVSAYASSHPWEDWAETWAHYLHMFDTLETAYACGVQLRPRHEG 300
           L+ HYENGPR DWEE FVSAYASSHPWEDWAETWAHYLHMFDTLETAYACGVQLRPRH G
Sbjct: 238 LQKHYENGPRADWEEQFVSAYASSHPWEDWAETWAHYLHMFDTLETAYACGVQLRPRHAG 297

Query: 301 EQKLVIKAPPVAAGSFDELVREWFALTYVLNSLNRSIGMPDSYPFTLTTPVLEKLRFVHE 360
           EQKLVI APP AAGSFDEL REWFALTYVLNSLNRSIGMPDSYPFTL+TPVL KLRFVHE
Sbjct: 298 EQKLVIPAPPTAAGSFDELAREWFALTYVLNSLNRSIGMPDSYPFTLSTPVLGKLRFVHE 357

Query: 361 VLNAG 365
           +++  
Sbjct: 358 LVSGA 362


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,326,803
Number of extensions: 57852
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 281
Effective length of database: 1,207,925
Effective search space: 339426925
Effective search space used: 339426925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)