BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2141.p
         (288 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311784|ref|YP_003775876.1| hypothetical protein Hsero_2469...   499   e-143
gi|300313117|ref|YP_003777209.1| hypothetical protein Hsero_3823...    63   3e-11
gi|300313116|ref|YP_003777208.1| hypothetical protein Hsero_3822...    60   2e-10

>gi|300311784|ref|YP_003775876.1| hypothetical protein Hsero_2469
           [Herbaspirillum seropedicae SmR1]
          Length = 288

 Score =  499 bits (1286), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 238/287 (82%), Positives = 260/287 (90%)

Query: 1   MPTAPSFTRTVRHPGPPEPERIVSLAGQAMHLDFTLQAGLNLRDAISLPLARAGLAGGTV 60
           M  AP F+RTVRHPG P+P+RIVSLAG AM LDFTL+AG NLRDAIS+PL+RAGL GGTV
Sbjct: 1   MQAAPRFSRTVRHPGAPDPQRIVSLAGPAMQLDFTLEAGRNLRDAISIPLSRAGLEGGTV 60

Query: 61  RFANLPLTALHFLMPALAVDEQHAAFYSAPHAIEEGTVIEYACATYGRKEGEPFVHCHAV 120
           RF  L +  LHFLMPALAVD+QHAAFYSAPHA+EEGT+I+YACATYGRK+GEPFVHCHAV
Sbjct: 61  RFGQLAIAELHFLMPALAVDDQHAAFYSAPHAMEEGTLIDYACATYGRKDGEPFVHCHAV 120

Query: 121 WRGRDAQRQGGHLMMEKTIVGTTTPAQAWGLHDATMATRHDPETNFTLFYPTRLSEQAAA 180
           WR R  QRQGGHLMMEKT+VG  TPAQAWGLHDATMATR+DPETNFTLFYPTRL+EQ   
Sbjct: 121 WRDRQGQRQGGHLMMEKTLVGADTPAQAWGLHDATMATRYDPETNFTLFYPTRLAEQTVT 180

Query: 181 ASGKRVVMARIRPDQDLTMAVEQACAAHGIRNAIVRGSVGSIIGAEFEDGRVLEDRATEI 240
           ++GKRVV+ARIRPDQDLTMAVE ACA HG+ NAIVRGSVGSIIGAEF+DGRVLEDRATEI
Sbjct: 181 STGKRVVLARIRPDQDLTMAVEAACAEHGMANAIVRGSVGSIIGAEFDDGRVLEDRATEI 240

Query: 241 LIRAGEVRNGVGRLDIGLINPQGQVCEGVLARGCNPVLICFELVLEE 287
           LIRAGEVR G  RL+IGLINPQGQVCEGVLARGCNPVLICFELVL+E
Sbjct: 241 LIRAGEVRQGRARLEIGLINPQGQVCEGVLARGCNPVLICFELVLQE 287


>gi|300313117|ref|YP_003777209.1| hypothetical protein Hsero_3823
           [Herbaspirillum seropedicae SmR1]
          Length = 152

 Score = 62.8 bits (151), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 12/115 (10%)

Query: 185 RVVMARIRPDQDLTMAVEQACAAHGIRNAIVRGSVGSIIGAEFEDGRVLEDRATEILIRA 244
           ++VMAR++P+QDLT +VE  C  HG+  AIVRG++GS+I A  +       R  E+    
Sbjct: 26  KLVMARLKPNQDLTESVEALCRQHGMDKAIVRGAIGSLIDAHLQYATPTGLREMEVNGPG 85

Query: 245 GEVRNGVGRLDIG------------LINPQGQVCEGVLARGCNPVLICFELVLEE 287
            E+ N  G +               + + +G++  G   RG N   I  E+ L+E
Sbjct: 86  VEILNVFGEIGFADGPASAHPLQGVVADTEGRIFAGRFVRGANLSFITIEITLQE 140


>gi|300313116|ref|YP_003777208.1| hypothetical protein Hsero_3822
           [Herbaspirillum seropedicae SmR1]
          Length = 179

 Score = 59.7 bits (143), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 68/167 (40%), Gaps = 3/167 (1%)

Query: 9   RTVRHPGPPEPERIVSL-AGQAMHLDFTLQAGLNLRDAISLPLARAGLAGGTVRFANLPL 67
           R   H G P   R + L A  A  L  TLQAG  +  A+   LAR G  GG  R      
Sbjct: 10  RKFLHAGQPSYPRTLDLEADPAEELRITLQAGTLVGPALRRVLARYGQRGGVGRLCGGTA 69

Query: 68  TALHFLMPALAVDEQHAAFYSAPHAIEEGTVIEYACATYGRK-EGEPFVHCHAVWRGRDA 126
             LH+       D      Y  PH +E          T G+  +G+  +HCH+ +   D 
Sbjct: 70  RRLHYHRIEQTGDASRPYDYGPPHVLEGVISFVTGAITIGQNADGKVLLHCHSGFIDGDG 129

Query: 127 QRQGGHLMMEKTIVGTTTPAQAWGLHD-ATMATRHDPETNFTLFYPT 172
              GGHL+++   VG         L   +      D ET+F+L +PT
Sbjct: 130 TLHGGHLLLDTVEVGDDPLILRLCLFSRSAFVVNSDEETHFSLLHPT 176


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,035,227
Number of extensions: 46666
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 3
Length of query: 288
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,222,130
Effective search space: 249314520
Effective search space used: 249314520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)