BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2139.p
         (321 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311786|ref|YP_003775878.1| hypothetical protein Hsero_2471...   561   e-161

>gi|300311786|ref|YP_003775878.1| hypothetical protein Hsero_2471
           [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  561 bits (1447), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 276/319 (86%), Positives = 292/319 (91%), Gaps = 4/319 (1%)

Query: 3   ATASLDNTITSKVLVLDRDTDCYATIKSFCERHHLVGLKAHEEHVMAVLRSNVDLGGIML 62
           +T S   TITSKVLV+D+D DCY TIK+FCERHHLVGLKAHEEH+MAVLRSNVDLGGIML
Sbjct: 10  STHSTHGTITSKVLVVDKDADCYDTIKAFCERHHLVGLKAHEEHIMAVLRSNVDLGGIML 69

Query: 63  SESLAGLGEGGGGLGLARRIREVRPELPIFLRRRRESADTPLAERDSELFSAVYRIEDID 122
           SE LAGLGEG  GL  ARRIREVRPELPIFLRRRRESAD PL  R+SELFSAVYRIE+ID
Sbjct: 70  SERLAGLGEGARGL--ARRIREVRPELPIFLRRRRESADQPLDTRESELFSAVYRIEEID 127

Query: 123 ALAPAVAASIFSQRYPNALVRGIAEISRMVLERQFPGMSVEIEQPYLVRDRIIFGEVFTL 182
           ALAPA+ A+IFSQ+YPNALVRGIAEISRMVLE QFPGMSVEI+QPYLVRDRIIFGEVFTL
Sbjct: 128 ALAPALTAAIFSQQYPNALVRGIAEISRMVLENQFPGMSVEIDQPYLVRDRIIFGEVFTL 187

Query: 183 IPLESSWCRGYMMLQAEQKTLQALAPEESGDFRNLNNALGELTNLIWGWFKNRFINQSQP 242
           IPLESSWCRGYMMLQAEQKTLQAL    S DFR+LNNALGELTNLIWGWFKNRFINQSQP
Sbjct: 188 IPLESSWCRGYMMLQAEQKTLQALTGNASDDFRDLNNALGELTNLIWGWFKNRFINQSQP 247

Query: 243 IQQLSQVPIIINHQHRYISFGSEDAQLCFKYLLRKGDGDDAPLVLLQRFIFNLSWSPEDF 302
           I QLSQVPIIINHQHRYISFGS+DAQLCFKY+LR+ DG  APLVLLQRFIFNLSWSPEDF
Sbjct: 248 IHQLSQVPIIINHQHRYISFGSDDAQLCFKYVLRREDG--APLVLLQRFIFNLSWSPEDF 305

Query: 303 IENQISVEDLFESGELELF 321
            ENQ SVE+LFESGELELF
Sbjct: 306 TENQTSVEELFESGELELF 324


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 894,030
Number of extensions: 34094
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 236
Effective length of database: 1,217,395
Effective search space: 287305220
Effective search space used: 287305220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)