BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2137.p (241 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311788|ref|YP_003775880.1| methyl-accepting chemotaxis pro... 384 e-108 gi|300312424|ref|YP_003776516.1| methyl-accepting chemotaxis sen... 70 1e-13 gi|300313306|ref|YP_003777398.1| methyl-accepting chemotaxis pro... 64 8e-12 gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis tra... 64 1e-11 gi|300313253|ref|YP_003777345.1| methyl-accepting chemotaxis I M... 62 3e-11 >gi|300311788|ref|YP_003775880.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 241 Score = 384 bits (986), Expect = e-108, Method: Compositional matrix adjust. Identities = 192/241 (79%), Positives = 213/241 (88%) Query: 1 MFQSILLVALGAVLAGLPMAALWLRQKRRARQLIDAAQLEQVRDQAQAALVQQQEQWAAH 60 M +ILLVALGAVLAGLP+A LWLRQ+RRA++LIDA QLE VR QAQ AL +Q++Q AH Sbjct: 1 MVNAILLVALGAVLAGLPLALLWLRQQRRAQRLIDAGQLELVRQQAQEALARQEQQMQAH 60 Query: 61 QQHLEQERLAAQDHMAELRRDSEAMLARLSSQQSDHLSRVKQNCDDSQDTISKLLGLVRT 120 +Q QER +AQ + E+R +SE M+ +L SQQSD+ SRVK+NCD SQDTI+KLLGLVRT Sbjct: 61 EQQARQERQSAQQLLEEMRLESETMIGQLQSQQSDNFSRVKENCDASQDTIAKLLGLVRT 120 Query: 121 FERWHDDMNELIAHNREMHRKNDEFALIVNQVVIVALNASIEAARAGVHGRGFAVVAQEV 180 FERWHDDMN LIAHNR+MHR NDEFALIVNQV+IVALNASIEAARAG HGRGFAVVAQEV Sbjct: 121 FERWHDDMNVLIAHNRDMHRMNDEFALIVNQVIIVALNASIEAARAGAHGRGFAVVAQEV 180 Query: 181 RDLAQRAEKLSKSYRDNLYQNDLITTTTFQDLQAGGKMIMGAVIGLDLINKKTRDALAQA 240 RDLAQRAEKLSKSYR NLYQNDLITTTTFQDLQAGGKMIMGAVIGLDLINKKTRD LA+A Sbjct: 181 RDLAQRAEKLSKSYRANLYQNDLITTTTFQDLQAGGKMIMGAVIGLDLINKKTRDTLAEA 240 Query: 241 A 241 A Sbjct: 241 A 241 >gi|300312424|ref|YP_003776516.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 531 Score = 70.5 bits (171), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 26/205 (12%) Query: 14 LAGLPMAALWLRQKRRARQLIDAAQLEQ--------------VRDQAQAALVQQQEQWAA 59 L G P A+WL + A L AA+LE +RDQ + LV Q Q A+ Sbjct: 206 LGGEPGEAMWLSGQIAAGNL--AARLELKSNDNGSLMRSLMIMRDQL-SGLVGQI-QHAS 261 Query: 60 HQQHLEQERLAAQD-HMAELRRDSEAMLARLSSQQSDHLSRVKQNCDDSQDTISKLLGLV 118 H+ + +A + +++ + A L +S + S V+QN +++ S Sbjct: 262 TSIHVAAQEIAQGNIDLSQRTEEQAASLEETASSMEELTSTVQQNAGNAKQASSMASAGA 321 Query: 119 RTFERWHDDMNELIAHNREM----HRKNDEFALIVN---QVVIVALNASIEAARAGVHGR 171 R ++ +++A REM H+ +D ++I Q I+ALNA++EAARAG +GR Sbjct: 322 EVARRGEAEIADVVATMREMSVSSHQMSDIISVIEGISFQTNILALNAAVEAARAGENGR 381 Query: 172 GFAVVAQEVRDLAQRAEKLSKSYRD 196 GFAVVA EVR LAQR+ +K +D Sbjct: 382 GFAVVASEVRALAQRSSAAAKEIKD 406 >gi|300313306|ref|YP_003777398.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 507 Score = 64.3 bits (155), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 7/108 (6%) Query: 128 MNELIAHNREMHRKNDEFALIVNQVVIVALNASIEAARAGVHGRGFAVVAQEVRDLAQRA 187 M+E+ A RE+ I Q I+ALNA++EAARAG GRGFAVVA EVR LAQR+ Sbjct: 335 MDEIQASAREIEEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRS 394 Query: 188 EKLSKSYRDNLYQNDLITTTTFQDLQAGGKMIMGAVIGLDLINKKTRD 235 +K +D + + + + AG K++ A ++ + + RD Sbjct: 395 ATAAKEIKD-------LIGNSVEKIAAGSKLVQAAGATIEELVRSVRD 435 >gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 582 Score = 63.9 bits (154), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/122 (37%), Positives = 64/122 (52%), Gaps = 11/122 (9%) Query: 84 AMLARLSSQQSDHLSRVKQNCDDSQ---------DTISKLLGLVRTFERWHDDMNELIAH 134 A L +S + S V+QN D+++ T++ G V R D MNE+ Sbjct: 299 ASLEETASSMEELTSTVRQNSDNARQANTLAENASTLAAKGGEV--VSRVIDTMNEISDS 356 Query: 135 NREMHRKNDEFALIVNQVVIVALNASIEAARAGVHGRGFAVVAQEVRDLAQRAEKLSKSY 194 + ++ I Q I+ALNA++EAARAG GRGFAVVA EVR LAQR+ +K Sbjct: 357 SSKVSDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDV 416 Query: 195 RD 196 +D Sbjct: 417 KD 418 >gi|300313253|ref|YP_003777345.1| methyl-accepting chemotaxis I MCP-I serine chemoreceptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 556 Score = 62.4 bits (150), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 59/106 (55%), Gaps = 7/106 (6%) Query: 98 SRVKQNCDDS----QDTISKLLGLVRTFERWHDDMNELIAHNREMHRKNDEFALI---VN 150 S VKQN D++ Q S VR E ++ + + N+ R D A+I Sbjct: 314 STVKQNADNASQANQLAASASEVAVRGGEVVRQVVDTMTSINQSSTRIVDIIAVIDGIAF 373 Query: 151 QVVIVALNASIEAARAGVHGRGFAVVAQEVRDLAQRAEKLSKSYRD 196 Q I+ALNA++EAARAG GRGFAVVA EVR LAQRA ++ +D Sbjct: 374 QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRAASAAREIKD 419 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.130 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 522,156 Number of extensions: 17712 Number of successful extensions: 165 Number of sequences better than 1.0e-08: 64 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 64 Length of query: 241 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 158 Effective length of database: 1,226,865 Effective search space: 193844670 Effective search space used: 193844670 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)