BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2135.p
         (755 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311791|ref|YP_003775883.1| phosphatidylserine/phosphatidyl...  1207   0.0  

>gi|300311791|ref|YP_003775883.1|
           phosphatidylserine/phosphatidylglycerophosphate/
           cardiolipin synthase [Herbaspirillum seropedicae SmR1]
          Length = 775

 Score = 1207 bits (3124), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 602/742 (81%), Positives = 653/742 (88%), Gaps = 10/742 (1%)

Query: 6   PQDDACPGLLQPGRNCWRLEHAQRFKLLIDAAEYFRALRLALLNARRSVYILGWDIDSRT 65
           P D    GLLQPGRNCWRL HA RF+LLIDAA+YF ALR AL+ ARRSVYILGWDIDSRT
Sbjct: 13  PPDAPATGLLQPGRNCWRLAHADRFRLLIDAADYFSALRQALVKARRSVYILGWDIDSRT 72

Query: 66  VLVPGITDDGLPPQLGDLLHALVERQPDLHIRVLNWDYAMLYALEREWILARKPGRSRNK 125
           VL P  +DDGLP QLGDLLHALVERQPDLHIRVLNWDYAMLYALEREW++ RKPGR RNK
Sbjct: 73  VLTPQGSDDGLPAQLGDLLHALVERQPDLHIRVLNWDYAMLYALEREWMMVRKPGRPRNK 132

Query: 126 RLHFRTDARHPVGASHHQKIVVIDDKLAFVGGLDLTRCRWDTPDHAIDNPLRCDPDGKPY 185
           RLHFRTDARHPVGASHHQKIVVIDD+LAFVGGLDLTRCRWD  +H  D+PLR DPD +PY
Sbjct: 133 RLHFRTDARHPVGASHHQKIVVIDDQLAFVGGLDLTRCRWDNQEHLPDHPLRRDPDDRPY 192

Query: 186 APFHDVQAMVDGEVACALGELARQRWALAGYAERRAQ----------LSAALVLPAEDPW 235
           APFHDVQAM DGEVA A+G LAR+RWALAGYAE+  +           +A   L A DPW
Sbjct: 193 APFHDVQAMADGEVARAMGVLARRRWALAGYAEKSTEKHTDTTEARATAAESTLAASDPW 252

Query: 236 PAALEPDLRDLYIGISRTEPAYEGRPGVFEVRELYLDAIAAAREQLFFENQYFTSNVLAE 295
           P A  PDL+D+ IGISRTEPAYE RPGV+EVRELYLDAIA AR+ LFFENQYFTSNVLAE
Sbjct: 253 PPAFVPDLQDVMIGISRTEPAYEDRPGVYEVRELYLDAIAEARQHLFFENQYFTSNVLAE 312

Query: 296 AIGARLREPQGPQVAVISPQTQSGWLEQATMGALRARIHHRLKSALKNQGQPATARYQMY 355
           A+GARLREP GP+VAVISP+TQSGWLEQATMGALRARIHHRLK+AL +QG+ A  RYQMY
Sbjct: 313 ALGARLREPDGPEVAVISPRTQSGWLEQATMGALRARIHHRLKAALADQGEGAERRYQMY 372

Query: 356 CPHLPGLEDGCCLNVHSKVFAMDDRLFSVGSANMSNRSMGFDTECNLTLEVQGDAAKQAE 415
           CPHLPGLED CCLNVHSKVFAMDDRLFSVGSANMSNRSMGFDTECNL++EVQGDAAKQA+
Sbjct: 373 CPHLPGLEDDCCLNVHSKVFAMDDRLFSVGSANMSNRSMGFDTECNLSIEVQGDAAKQAQ 432

Query: 416 LRAAIALMRNRLLAEHLGVSPAAVQQALQTEAGLHGAIARLRQPGQRELRPLDPRLIPEL 475
           +R  IA +RNRLL EHLGV   AVQQA++   GLH AI  L QP  R L+PLDPRLIPEL
Sbjct: 433 VRQVIATLRNRLLGEHLGVPAQAVQQAMEDSGGLHAAIDALTQPEARSLQPLDPRLIPEL 492

Query: 476 DALTQDNAVFDPERPISPDEIVDAYVPRSARKPVPRRMIGLGVLAVALVAFALAWRFTPL 535
           DA+TQDNAVFDPERPISPDEIVDAYVPRSARKPVPRRMIGLGVLAV LVAFALAWRFTPL
Sbjct: 493 DAVTQDNAVFDPERPISPDEIVDAYVPRSARKPVPRRMIGLGVLAVLLVAFALAWRFTPL 552

Query: 536 REWINLASLIALARSVDQMPFTPAIVIAAFVVAGMLMVPITVLIAVAGVVFGPVNGGLYA 595
           REWINL SLIALARSVD++PF+P IV+  FVVAGMLMVPITVLIAVAGVVFGP+NGGLYA
Sbjct: 553 REWINLNSLIALARSVDKLPFSPLIVMTTFVVAGMLMVPITVLIAVAGVVFGPLNGGLYA 612

Query: 596 SAGVGLSALLGFGLGHWLGHDALREMLGPRINNLSRRFAQRGIAAMAVVRLLPIAPFTVV 655
           + GVGLSALLGFG+GHWLGHDALR++LGPRINNLSRRFAQRGIAAMAVVRLLPIAPFT+V
Sbjct: 613 AVGVGLSALLGFGVGHWLGHDALRDLLGPRINNLSRRFAQRGIAAMAVVRLLPIAPFTIV 672

Query: 656 NVVAGASHLGLRDYLLGTLIGMAPGIVLTVVFSHNLAEAIRHPSLQTMLVLAGVTAALML 715
           NVVAGASHL LRDYLLGTL+GM+PGIVLTVVFSHNLAEAIRHPSL+T+LVL  VT ALML
Sbjct: 673 NVVAGASHLRLRDYLLGTLLGMSPGIVLTVVFSHNLAEAIRHPSLETVLVLVAVTVALML 732

Query: 716 TAFGLQKLLKPRQRNQGRAQRQ 737
            AFGLQKL +PR + +GRA  Q
Sbjct: 733 VAFGLQKLFRPRGQERGRASSQ 754


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,367,730
Number of extensions: 101586
Number of successful extensions: 368
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 1
Length of query: 755
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 663
Effective length of database: 1,184,250
Effective search space: 785157750
Effective search space used: 785157750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 134 (56.2 bits)