BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2134.p
         (271 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311792|ref|YP_003775884.1| metal-dependent hydrolase [Herb...   408   e-115
gi|300309579|ref|YP_003773671.1| metal-dependent hydrolase [Herb...    77   2e-15

>gi|300311792|ref|YP_003775884.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 260

 Score =  408 bits (1048), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/261 (77%), Positives = 226/261 (86%), Gaps = 3/261 (1%)

Query: 11  TGKLSPRQPEHGVSAHSDTELVLTADVPLHNLDPWPLKVATYNIHGARGTDGLFSPGRIA 70
           + +LS RQ      A +DTELVL+AD P+   DPWPL VATYNIHGA GTDG F+P R+A
Sbjct: 3   SARLSERQ---TAPAPADTELVLSADAPVPGRDPWPLTVATYNIHGAVGTDGRFAPERVA 59

Query: 71  RVLQEIDADILALQEVPLGGASQVDVLALLREATGLFAVEGPTLQSPERRYGNAVLSRYP 130
            VL E+ AD++ALQEVPLGGA QVDVLALLR  TG+FA EGPT++SP RRYGNAVLSRYP
Sbjct: 60  AVLDELQADVVALQEVPLGGADQVDVLALLRAHTGMFAAEGPTMESPARRYGNAVLSRYP 119

Query: 131 VLATQNIDLSFGSREPRGALDADIDCRGHMLRVIATHLGLKPAERRAQIKRLLQAFDTDQ 190
           +LAT++IDLSFGSREPRGALDADIDCRG +LRV+ATHLGLKPAERRAQIKRLLQAFDT+ 
Sbjct: 120 ILATESIDLSFGSREPRGALDADIDCRGQLLRVVATHLGLKPAERRAQIKRLLQAFDTND 179

Query: 191 APVILMGDVNEWFMWGRALRWLVSHFEAAPAPRTFPSRWPLFALDRIWISPRQRLLQVHV 250
           APVIL+GDVNEWFMWGR LRWLV HFEAAPAP TFPSRWP+FALDRIWISPR+RL  + V
Sbjct: 180 APVILLGDVNEWFMWGRTLRWLVGHFEAAPAPPTFPSRWPVFALDRIWISPRRRLQHLAV 239

Query: 251 HRSPLARVASDHLPLVAHIDG 271
           HRS LARVASDHLPL+AHI G
Sbjct: 240 HRSALARVASDHLPLLAHIAG 260


>gi|300309579|ref|YP_003773671.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 265

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 110/269 (40%), Gaps = 55/269 (20%)

Query: 47  LKVATYNIHGARGTDGLFSPGRI---ARVLQEIDADILALQEV---------------PL 88
           L+VATYNIH  +G        RI    + L ++D DIL LQEV               P 
Sbjct: 3   LRVATYNIH--KGVTSFAGRPRILALKQALAQLDPDILFLQEVQGRHDLNALRHASNWPQ 60

Query: 89  GGASQVDVLALLREATGLFAVEGPTLQSPERRYGNAVLSRYPVLATQNIDLSFGSREPRG 148
            G  +         A G+ AV           +GNA++SR+ + + +N D+S  + E RG
Sbjct: 61  QGQHEYLAGDTHHAAYGMNAV------YDHGHHGNALISRFEIASIRNQDVSDHAYESRG 114

Query: 149 ALDADIDCRGHMLRVIATHLGLKPAERRAQIKRLLQAFDTDQ---APVILMGDVNEWF-M 204
            L   +   G  +     HLGL    RR QI  L+QA  T     AP+++ GD N+W   
Sbjct: 115 ILHCVVPVEGVEVHCYVIHLGLFAGGRRRQIDALIQAVSTSSPPDAPLLIAGDFNDWTNQ 174

Query: 205 WGRALRWLVSHFEAAPAP------------------------RTFPSRWPLFALDRIWIS 240
             R L   +   E    P                        RTFP+  P   LDRI++ 
Sbjct: 175 LSRTLYQNLGVTEVFDQPQPNARGVMQGLRRLGGLSAPIRPARTFPAMMPWLRLDRIYVR 234

Query: 241 PRQRLLQVHVHRSPLARVASDHLPLVAHI 269
             +      +   P AR+ SDH P+V  +
Sbjct: 235 GFRVETAEVLKDGPWARL-SDHAPIVTEL 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 960,906
Number of extensions: 42862
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 2
Length of query: 271
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,222,130
Effective search space: 228538310
Effective search space used: 228538310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)