BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2133.p
         (117 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311793|ref|YP_003775885.1| hypothetical protein Hsero_2478...   120   4e-29

>gi|300311793|ref|YP_003775885.1| hypothetical protein Hsero_2478
           [Herbaspirillum seropedicae SmR1]
          Length = 116

 Score =  120 bits (300), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/89 (66%), Positives = 70/89 (78%), Gaps = 1/89 (1%)

Query: 30  HQRRTRRWCMAGLVGIPLLLGVLWQPFVAAR-GGPWFYADHLCDCREVVSLWVWDYVWTQ 88
           H+R+ +RWC+AG+VGIPLLL  LW  F AAR GG W YAD +C CR+V++ WV DYVWTQ
Sbjct: 28  HRRQMQRWCLAGVVGIPLLLTFLWLQFAAARSGGDWLYADQVCGCRDVLASWVSDYVWTQ 87

Query: 89  MIWLPGNALFLLIWSALAIKLWNCGRSAR 117
           MIWLPGN LFLLIW ALA+KLW+  R  R
Sbjct: 88  MIWLPGNTLFLLIWGALAVKLWSDKRRRR 116


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.144    0.545 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 383,895
Number of extensions: 12363
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 117
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,269,480
Effective search space: 54587640
Effective search space used: 54587640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 124 (52.4 bits)