BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2132.p
         (216 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311794|ref|YP_003775886.1| TetR family transcription regul...   384   e-108

>gi|300311794|ref|YP_003775886.1| TetR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 239

 Score =  384 bits (985), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/203 (92%), Positives = 197/203 (97%)

Query: 1   LEHIISLTFISDPATGRRRNAVSHDAILDATYVMLEEIGFDKLSLEGVAARAGVGKATIY 60
           LEHIISLTFISDPATGRRRNAVSHDAILDATYVMLEEIGFDKLSLEGVAARAGVGKATIY
Sbjct: 33  LEHIISLTFISDPATGRRRNAVSHDAILDATYVMLEEIGFDKLSLEGVAARAGVGKATIY 92

Query: 61  RWWPNKSALAMEALLRAVEPMPPLGDSGAAREDIEQHMLQLSQLLRGKSGRVVREMIALA 120
           RWWPNKSALAMEALLRAVEPMPP+GDSG++R DIE HMLQLSQLLRGKSGRVVREMIALA
Sbjct: 93  RWWPNKSALAMEALLRAVEPMPPIGDSGSSRTDIELHMLQLSQLLRGKSGRVVREMIALA 152

Query: 121 QFDEESKRIFNDHYLEPRRLALVNVLRRGAQRGEFRDDADLNLVFDLLYAPLLQRLLTGS 180
           QF+ ESKRIFND+YLEPRRLALV+VLRRGAQRGEFR+DADL+LVFDLLYAPLLQRLLTG 
Sbjct: 153 QFEPESKRIFNDNYLEPRRLALVSVLRRGAQRGEFREDADLSLVFDLLYAPLLQRLLTGQ 212

Query: 181 ADIDERQVQSQLKLVLGSVALPS 203
            DIDERQVQ+QLKLVLGS+ LPS
Sbjct: 213 GDIDERQVQAQLKLVLGSITLPS 235


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 627,137
Number of extensions: 24971
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 135
Effective length of database: 1,236,335
Effective search space: 166905225
Effective search space used: 166905225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)