BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2131.p
         (230 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311795|ref|YP_003775887.1| signal peptidase I (SPase I) fa...   370   e-104
gi|300311259|ref|YP_003775351.1| signal peptidase I (SPase I) fa...   119   3e-28

>gi|300311795|ref|YP_003775887.1| signal peptidase I (SPase I)
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 231

 Score =  370 bits (949), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/225 (81%), Positives = 201/225 (89%)

Query: 1   MPSTIRQLLAQNKGLLAFIALMVVFRSAIADYNVVPSGSMLPTVMVGDRILVDKLAYDLR 60
           M ST+ +LLA NKGLLAFIALMV+FRSAIADYNVVPSGSMLPTV +GDRILVDK+AYDLR
Sbjct: 1   MKSTLNKLLADNKGLLAFIALMVMFRSAIADYNVVPSGSMLPTVQIGDRILVDKMAYDLR 60

Query: 61  LPLTHISLMRLGEPQRGDIVTVDSRQAGELLLKRIVGLPGDVVELRDNVLYINGQAASYG 120
           LPLTHISL+RLGEPQRGDIVT+DSRQAGELL+KRIVGLPGDVVELRDNVL+INGQ A Y 
Sbjct: 61  LPLTHISLLRLGEPQRGDIVTIDSRQAGELLVKRIVGLPGDVVELRDNVLFINGQPAHYH 120

Query: 121 PARAQPEQGDRVDQARYRDESIDGMNHLVRLSAAHPSLHSSFGPVVVPADHYMMLGDNRD 180
           PA   PE GD  DQA YRDE    M H VRLSAAHPSLHSS+GPVVVP  HYMMLGDNRD
Sbjct: 121 PAAEAPEAGDGSDQAAYRDERYGAMEHAVRLSAAHPSLHSSYGPVVVPPGHYMMLGDNRD 180

Query: 181 NSMDSRYFGFFARNELMGRTRRIAFSLNADQYFKPRLDRFGRRLD 225
           NSMDSRYFGFFAR+ELMGRTRRIAFSL+A++ ++PRL+RFG+ LD
Sbjct: 181 NSMDSRYFGFFARDELMGRTRRIAFSLDAERGYRPRLERFGQLLD 225


>gi|300311259|ref|YP_003775351.1| signal peptidase I (SPase I)
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  119 bits (297), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 111/207 (53%), Gaps = 21/207 (10%)

Query: 19  IALMVVFRSAIADYNVVPSGSMLPTVMVGDRILVDKLAYDLRLPLTHISLMRLGEPQRGD 78
           IAL+   RS + +   +PS SM+PT++VGD ILV+K  Y +RLP+ +  ++ + +PQRGD
Sbjct: 91  IALVFCLRSFLYEPFKIPSSSMVPTLLVGDLILVNKFTYGIRLPIINKKIIEVNQPQRGD 150

Query: 79  IVTVDSRQAGEL-LLKRIVGLPGDVVELRDNVLYINGQAASYGPARAQPEQGDRVDQARY 137
           ++     +   +  +KR+VG+PGD +  ++  L +NG+  SY   +A P+  D  +   Y
Sbjct: 151 VMVFKYPKDMSVDYIKRVVGVPGDKIVYKNKRLTVNGEQISY---KALPDYLDEENLTYY 207

Query: 138 R--DESIDGMNHLVRLSAAHPSL--------HSSFGP-------VVVPADHYMMLGDNRD 180
           +   E++ G+ H +      P+         H              VP   Y M+GDNRD
Sbjct: 208 KQWQENLTGVEHKILTDERAPNFVPNPDAFPHHELCTYNAEGFACTVPPGEYFMMGDNRD 267

Query: 181 NSMDSRYFGFFARNELMGRTRRIAFSL 207
           NS+DSRY+GF     ++G+   +  +L
Sbjct: 268 NSLDSRYWGFVPDQNIVGKAFFVWMNL 294


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 757,138
Number of extensions: 33345
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 2
Length of query: 230
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,231,600
Effective search space: 182276800
Effective search space used: 182276800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)