BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2130.p (462 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine... 427 e-121 gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine... 75 1e-14 gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine... 69 6e-13 >gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 469 Score = 427 bits (1099), Expect = e-121, Method: Compositional matrix adjust. Identities = 259/463 (55%), Positives = 302/463 (65%), Gaps = 12/463 (2%) Query: 4 TTTAHAMLTEIWQALDGPAATLSAVQLSGQGALPSVFATSDLAQASVAAAGLALAELVQA 63 T A L E W AL G A + G G L S F +DLA A++ AA A AEL+QA Sbjct: 7 TQAASQHLREFWTALGGAPALAATCGFGGTGELVSAFRVTDLAAAAIGAAATAAAELLQA 66 Query: 64 GGAPLPQVVCERRLASRWFSASLRPQGWQAPSLWDAVAGDYRTADGWIRLHTNAAHHRVA 123 LP V +RR+AS WF ASL P GW P LWDA+AG+YR D WIRLHTNA HHR A Sbjct: 67 STGHLPAVHVDRRMASLWFGASLHPLGWTMPPLWDAIAGNYRARDRWIRLHTNAPHHRQA 126 Query: 124 ALEVLGLDPQQAS-RADVAGEVVRWAGTELETAIVAHGGCAAQMRSQADWAAHPQGVAVA 182 AL VL Q S R VAG W LE AIVA GGCAA M S+ +WAAHPQG AVA Sbjct: 127 ALSVLDCAADQESVRQAVAG----WDADTLEAAIVARGGCAAVMYSREEWAAHPQGKAVA 182 Query: 183 AEPLVARQVFAGSVQPRHPVNPAR--PLAGVRVLDLTRVLAGPTATRFLAGFGADVLRID 240 AEPL+ V G+ P+R PL G+RVLDLTR+LAGP ATRFLAG GA+VLRID Sbjct: 183 AEPLL--HVATGARVSTRAWEPSRDRPLRGIRVLDLTRILAGPVATRFLAGLGAEVLRID 240 Query: 241 PASWNEPGVVPEMTLGKRCAQLELDRPEDRATLETLLAQADVMVHGYRSDALEHLGLGAQ 300 P W EP VPE+ LGKRCA+L L P D TL L+ AD++VHGYRSDAL LGL A Sbjct: 241 PYGWEEPNTVPEVVLGKRCARLNLKDPADLDTLRRLMGHADILVHGYRSDALAKLGLDAA 300 Query: 301 RRRALNPALVDVALDAYGWSGPWAGRRGFDSLVQMSSGIADFGMKQKGSDQPVPLPVQAL 360 +RR LNPAL+DV+LDAYGWSG W RRGFDSL+QMS+GIA+ GM+ GS PV LPVQA+ Sbjct: 301 QRRELNPALIDVSLDAYGWSGAWQCRRGFDSLIQMSTGIAEAGMRVMGSAAPVNLPVQAI 360 Query: 361 DHATGYLLAASVLRGLALRQQSGQGSQYRLSLARTARLLADYPAAPAQ--PNFAAETAED 418 DHATGYL+AA+ LRGL LR G G + R SLARTA +L P + FAAET D Sbjct: 361 DHATGYLMAAAALRGLTLRMTRGVGIEVRASLARTAAVL-QLRTEPMREVSGFAAETPVD 419 Query: 419 LDSRIEHTAWGPAQRLRSPLQVAGSPMYWDRPASPLRSLPARW 461 + +E T+WGPA RL P+Q+ G+P+ W PA L + W Sbjct: 420 RCAHVEPTSWGPAARLLPPVQIEGAPLAWRYPARALGAYEPEW 462 >gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 415 Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 12/145 (8%) Query: 207 PLAGVRVLDLTRVLAGPTATRFLAGFGADVLRIDPASWNEP----GVVPEMT-------- 254 PLAG++VL+L ++AGP +R LA FGADV++++ +P V+ + T Sbjct: 10 PLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDGTSLWWSVQA 69 Query: 255 LGKRCAQLELDRPEDRATLETLLAQADVMVHGYRSDALEHLGLGAQRRRALNPALVDVAL 314 K+ L + + L +ADV++ YR LE LG + + LNPA + V L Sbjct: 70 RNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLNPATIMVRL 129 Query: 315 DAYGWSGPWAGRRGFDSLVQMSSGI 339 YG +GP GF ++ + GI Sbjct: 130 SGYGQTGPLRDLPGFGAIGESMGGI 154 >gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 399 Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 12/146 (8%) Query: 206 RPLAGVRVLDLTRVLAGPTATRFLAGFGADVLRIDPASWNE---------PGVVPEMTLG 256 RPL G+ V+ L +A P TR LA GA V++I+ + G+ Sbjct: 6 RPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSSHFVWT 65 Query: 257 KRCAQ---LELDRPEDRATLETLLAQADVMVHGYRSDALEHLGLGAQRRRALNPALVDVA 313 R + L L E R ++ LL QADV+V A LGL AQ A +P L+ Sbjct: 66 NRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALHARHPRLIVCD 125 Query: 314 LDAYGWSGPWAGRRGFDSLVQMSSGI 339 + YG GP+ ++ +D L+Q +G Sbjct: 126 ISGYGEDGPYRDKKAYDLLIQSEAGF 151 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.131 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,557,509 Number of extensions: 69119 Number of successful extensions: 261 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 256 Number of HSP's successfully gapped: 3 Length of query: 462 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 373 Effective length of database: 1,198,455 Effective search space: 447023715 Effective search space used: 447023715 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)