BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2127.p (1050 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump pr... 2019 0.0 gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump tr... 1066 0.0 gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump pr... 1040 0.0 gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 389 e-109 gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 382 e-107 >gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 2019 bits (5231), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1014/1048 (96%), Positives = 1037/1048 (98%) Query: 1 VSVSAAFIKRPIGTTLLALAILLVGIAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMA 60 +SVSAAFIKRPIGTTLLA+AILLVG+AVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMA Sbjct: 1 MSVSAAFIKRPIGTTLLAIAILLVGVAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMA 60 Query: 61 SNVAQPLERQFSLIAGLSQMTSQSTLGTTQITLQFDLNRSIDAAALDVQAAINASTGQLP 120 SNVAQPLERQFSLIAGLSQMTSQSTLG+TQITLQFDLNR+IDAAALDVQAAINASTGQLP Sbjct: 61 SNVAQPLERQFSLIAGLSQMTSQSTLGSTQITLQFDLNRNIDAAALDVQAAINASTGQLP 120 Query: 121 ANLPSPPTFRKINPADSPIMIMSVQSDALPLTVVNDYADNILAQQISQISGVGLVNVNGQ 180 ANLP+PPTFRKINPADSPIMIMSVQS+ALPLTVVNDYADNILAQQISQISGVGLVNVNGQ Sbjct: 121 ANLPNPPTFRKINPADSPIMIMSVQSEALPLTVVNDYADNILAQQISQISGVGLVNVNGQ 180 Query: 181 QKPAVRIQVDPAKLATLGISLEDIRGVIATTTVNQPKGTVDGARQAFTVYTNDQLLKAEQ 240 QKPAVRIQVDPAKLATLG+SLEDIRGVIATTTVNQPKGTVDGARQAFTVYTNDQLLKAEQ Sbjct: 181 QKPAVRIQVDPAKLATLGLSLEDIRGVIATTTVNQPKGTVDGARQAFTVYTNDQLLKAEQ 240 Query: 241 WNDMVLAWRNGAPIRVKDIGVAVDGPENNKIAAWAFSGAANTADHTITNGRSIVLAITKQ 300 WNDMVLAWRNGAPIRVKDIG+AVDGPENNKIAAWAF+GAANTADH+ITNGRSIVLAITKQ Sbjct: 241 WNDMVLAWRNGAPIRVKDIGIAVDGPENNKIAAWAFAGAANTADHSITNGRSIVLAITKQ 300 Query: 301 PGANVIETVGRIKAAMPRLRAAIPAAIHVNTLIDRTQTIRASVEDVEFTLVLTIALVVMV 360 PGANVIETVGRIKAAMPRLRAAIPAAIHVNTLIDRTQTIRASVEDVEFTLVLTIALVVMV Sbjct: 301 PGANVIETVGRIKAAMPRLRAAIPAAIHVNTLIDRTQTIRASVEDVEFTLVLTIALVVMV 360 Query: 361 IFVFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVDDAIVMLE 420 IFVFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVDDAIVMLE Sbjct: 361 IFVFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVDDAIVMLE 420 Query: 421 NIYRYVEEGMTPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTVT 480 NIYRYVEEGMTPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTVT Sbjct: 421 NIYRYVEEGMTPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTVT 480 Query: 481 LTIGVSVIISLTLTPMLCSRFLKNEHGRQHGKLYQWFERCFDAMLNGYKRGLDVVMRHQF 540 LTI VSVIISLTLTPMLCSRFLKNEHG++HGKLYQWFERCFDAML GYKRGLDVVM+HQF Sbjct: 481 LTIAVSVIISLTLTPMLCSRFLKNEHGQRHGKLYQWFERCFDAMLAGYKRGLDVVMKHQF 540 Query: 541 ITLMSFIATVALTVALFIFIPKGFFPQQDNGVIVGFAESSQDTSSAAMHERLLKVAEVVR 600 ITLMSFIAT+ALT LFIFIPKGFFPQQDNGVIVGFAES+QDTSSAAMHERLLKVAEVVR Sbjct: 541 ITLMSFIATLALTAVLFIFIPKGFFPQQDNGVIVGFAESAQDTSSAAMHERLLKVAEVVR 600 Query: 601 QDPDVIGFAMSAGSTTFNTGQFFIALKPKDEGRTTNADEIIARLRPKVARIEGVNLFMQA 660 QDPDVIGFAMSAGSTTFNTGQFFIALKPKD+GRTTNADEIIARLRPKVARIEGVNLFMQA Sbjct: 601 QDPDVIGFAMSAGSTTFNTGQFFIALKPKDQGRTTNADEIIARLRPKVARIEGVNLFMQA 660 Query: 661 SQDINVGGRLSRTQYQYTITDTDLDELNVWAPRMLERFRRLPQLTDVASDQQNQAAAAVI 720 SQDINVGGRLSRTQYQYTITDTDLDELNVWAPRMLERFR+LPQLTDVASDQQNQAAAAVI Sbjct: 661 SQDINVGGRLSRTQYQYTITDTDLDELNVWAPRMLERFRQLPQLTDVASDQQNQAAAAVI 720 Query: 721 TIDRARASSFGISPSLIDATIYDAIGQRQVAQYFTQINSYHVILEVTPQLQKDPSLFDKL 780 TIDRARASSFGISPSLIDATIYDAIGQRQVAQYFTQINSY VILEVTP LQKDP+LFDKL Sbjct: 721 TIDRARASSFGISPSLIDATIYDAIGQRQVAQYFTQINSYRVILEVTPALQKDPALFDKL 780 Query: 781 YLTSPLTGQQVPLSTFVKIDTSKTSYLSISHQSQFPAVTISFNLAKGVSLGEAVDVIQKT 840 YLTSPLTGQQVPLSTFVKIDTSKTSYLSISHQSQFPAVTISFNLAKGVSLGEAVDVIQKT Sbjct: 781 YLTSPLTGQQVPLSTFVKIDTSKTSYLSISHQSQFPAVTISFNLAKGVSLGEAVDVIQKT 840 Query: 841 KDEMGVPQTLVGNFQGTAKAFGDSLSSQPYLIAAALIAVYIVLGLLYESYIHPLTILSTL 900 KD+MGVPQTLVGNFQGTAKAFGDSLSSQPYLIAAALIAVYIVLGLLYESYIHPLTILSTL Sbjct: 841 KDQMGVPQTLVGNFQGTAKAFGDSLSSQPYLIAAALIAVYIVLGLLYESYIHPLTILSTL 900 Query: 901 PSAGVGALLILMIGGYDLSVIALIGIILLIGIVKKNGIMMIDFALTAERTQGMKPEQAIY 960 PSAGVGALLILM GGYDLSVIALIGIILLIGIVKKNGIMMIDFALTAER+QGMKPEQAIY Sbjct: 901 PSAGVGALLILMAGGYDLSVIALIGIILLIGIVKKNGIMMIDFALTAERSQGMKPEQAIY 960 Query: 961 QACLLRFRPIMMTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLVLSQALTLFTTPVV 1020 QACLLRFRPIMMTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGL+LSQALTLFTTPVV Sbjct: 961 QACLLRFRPIMMTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLILSQALTLFTTPVV 1020 Query: 1021 YLYLDRAHYWYERKKKARQERKAACLAQ 1048 YLYLDRAHYWY RKK+ARQ RKAA LA Sbjct: 1021 YLYLDRAHYWYMRKKEARQARKAARLAN 1048 >gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 1066 bits (2756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 558/1045 (53%), Positives = 750/1045 (71%), Gaps = 24/1045 (2%) Query: 4 SAAFIKRPIGTTLLALAILLVGIAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMASNV 63 S FI RP+ T+LL LAILLVGI + LLP++ LP+VD+PTIQV PG SP+ M S+V Sbjct: 4 SRQFILRPVATSLLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMTSSV 63 Query: 64 AQPLERQFSLIAGLSQMTSQSTLGTTQITLQFDLNRSIDAAALDVQAAINASTGQLPANL 123 PLERQF + GL QM+S S+ G + ITLQF+L+ S+D A +VQAAINA + LP++L Sbjct: 64 TAPLERQFGQMPGLKQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAGSNLLPSDL 123 Query: 124 PSPPTFRKINPADSPIMIMSVQSDALPLTVVNDYADNILAQQISQISGVGLVNVNGQQKP 183 P PP + K+NPAD+PI+ ++V S+ +PL V D D +AQ+ISQ+SGVGLV+++G Q+P Sbjct: 124 PMPPVYSKVNPADTPIITLAVTSNTMPLPKVQDLIDTRIAQKISQLSGVGLVSLSGGQRP 183 Query: 184 AVRIQVDPAKLATLGISLEDIRGVIATTTVNQPKGTVDGARQAFTVYTNDQLLKAEQWND 243 AVR+Q++P +A LG++L+D+R I VNQ KG+ DG +A T+ NDQL A+++ + Sbjct: 184 AVRMQLNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTRASTIDANDQLRSADEYRN 243 Query: 244 MVLAWRNGAPIRVKDIGVAVDGPENNKIAAWAFSGAANTADHTITNGRSIVLAITKQPGA 303 +++A++NGAPIRV D+ VDG EN ++ AWA NT I N I +QPGA Sbjct: 244 LIIAYKNGAPIRVSDVADVVDGAENVRLGAWA-----NTQPAVIVN-------IQRQPGA 291 Query: 304 NVIETVGRIKAAMPRLRAAIPAAIHVNTLIDRTQTIRASVEDVEFTLVLTIALVVMVIFV 363 NVI V IK +P+L+A++P AI V+ L DRT TIRASV+DV+F L+L++ALVVMVIFV Sbjct: 292 NVIAVVDSIKKILPQLQASLPGAIDVHILTDRTTTIRASVDDVKFELLLSVALVVMVIFV 351 Query: 364 FLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVDDAIVMLENIY 423 FLRNV AT+IPSV VPL+++GT +MY+ G+S++NL+LMALTIA GFVVDDAIVM+ENI Sbjct: 352 FLRNVPATIIPSVAVPLSLVGTFAIMYLAGFSINNLTLMALTIATGFVVDDAIVMIENIS 411 Query: 424 RYVEEGMTPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTVTLTI 483 RY+EEGM P++AALKGA +IGFTIIS++ SL+AV IPLL MG +VGRLF EFAVT+ ++I Sbjct: 412 RYIEEGMKPMQAALKGAEQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFHEFAVTLAVSI 471 Query: 484 GVSVIISLTLTPMLCSRFLKNEHGRQHGKLYQWFERCFDAMLNGYKRGLDVVMRHQFITL 543 +S ++SLTLTPM+C+R L+++ Q G Y ++ FD ++ Y L V+ Q +TL Sbjct: 472 LISAVVSLTLTPMMCARLLRHQPEEQQGWFYHKSQQFFDRIIARYGVMLQWVLARQKLTL 531 Query: 544 MSFIATVALTVALFIFIPKGFFPQQDNGVIVGFAESSQDTSSAAMHERLLKVAEVVRQDP 603 + AT+ LTV L++F+PKGFFP QD GVI G +E++Q S +AM E+ ++A+VV QDP Sbjct: 532 LVAAATLGLTVLLYVFVPKGFFPLQDTGVIQGISEATQSISFSAMGEKQQQLAKVVLQDP 591 Query: 604 DVIGFAMSAG----STTFNTGQFFIALKPKDEGRTTNADEIIARLRPKV-ARIEGVNLFM 658 V G + T N+G+ I LKP D R +A ++I RL+ K+ A + G+ L+M Sbjct: 592 AVESLTSFIGVDGTNATLNSGRMLINLKPHDV-REVSATDVIRRLQGKLAAEVPGITLYM 650 Query: 659 QASQDINVGGRLSRTQYQYTITDTDLDELNVWAPRMLERFRRLPQLTDVASDQQNQAAAA 718 Q QD+ + +SRTQYQ+T+ D D L+ W P+++ R ++ +L DVA++ Q+Q A Sbjct: 651 QPVQDLTIEDSVSRTQYQFTLEDADPAVLSTWVPKLIARLQQQSELADVATNLQDQGLQA 710 Query: 719 VITIDRARASSFGISPSLIDATIYDAIGQRQVAQYFTQINSYHVILEVTPQLQKDPSLFD 778 I IDR AS GI+ + ID +Y+A GQR ++ +TQ N Y V++EV P+ Q P+ D Sbjct: 711 YIEIDRNAASRLGITTAAIDNALYNAFGQRLISTIYTQSNQYRVVMEVKPEFQHGPAALD 770 Query: 779 KLYLTSPLTGQQVPLSTFVKIDTSKTSYLSISHQSQFPAVTISFNLAKGVSLGEAVDVIQ 838 +YL + G +VPLS+ + T +T+ L ++H QFPA T+SFNLAKG SLGEAV I+ Sbjct: 771 SIYLVTS-GGGKVPLSSIATV-TERTAPLVVNHIGQFPAATVSFNLAKGASLGEAVKAIK 828 Query: 839 KTKDEMGVPQTLVGNFQGTAKAFGDSLSSQPYLIAAALIAVYIVLGLLYESYIHPLTILS 898 ++E+G+P + V NFQG A AF SLS+ +LI AA++ +YIVLG+LYESYIHP+TILS Sbjct: 829 AAEEEIGMPASTVTNFQGAALAFQASLSNTLWLILAAIVTMYIVLGVLYESYIHPITILS 888 Query: 899 TLPSAGVGALLILMIGGYDLSVIALIGIILLIGIVKKNGIMMIDFALTAERTQGMKPEQA 958 TLPSAGVGALL LMI G DL +I +IGIILLIGIVKKN IMMIDFAL AER +G P +A Sbjct: 889 TLPSAGVGALLSLMISGTDLGIIGIIGIILLIGIVKKNAIMMIDFALEAERHEGKSPREA 948 Query: 959 IYQACLLRFRPIMMTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLVLSQALTLFTTP 1018 IYQACLLRFRPI+MTTM ALL LPLMLG G GSELR+PLG MVGGL++SQ LTLFTTP Sbjct: 949 IYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLGITMVGGLLVSQVLTLFTTP 1008 Query: 1019 VVYLYLDRAHYWYERKKKARQERKA 1043 V+YL D R+ +AR ++A Sbjct: 1009 VIYLGFDS----LGRRLRARFGQRA 1029 >gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1078 Score = 1040 bits (2689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 528/1098 (48%), Positives = 747/1098 (68%), Gaps = 74/1098 (6%) Query: 1 VSVSAAFIKRPIGTTLLALAILLVGIAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMA 60 +++S FI+RPI TTLL + I L GI + LLPV+PLPQVD+PTI ++A +PG SPETMA Sbjct: 1 MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA 60 Query: 61 SNVAQPLERQFSLIAGLSQMTSQSTLGTTQITLQFDLNRSIDAAALDVQAAINASTGQLP 120 + VA PLER IAG+++MTS S+ +T+ITLQFDL+R ID AA DVQAA+NA+ LP Sbjct: 61 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLSRDIDGAARDVQAALNAARNLLP 120 Query: 121 ANLPSPPTFRKINPADSPIMIMSVQSDALPLTVVNDYADNILAQQISQISGVGLVNVNGQ 180 +PS PT+RK+NPAD+PI+I+++ SD + + D AD+I+AQ++SQ+ GVG V+V G Sbjct: 121 TGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGS 180 Query: 181 QKPAVRIQVDPAKLATLGISLEDIRGVIATTTVNQPKGTVDGARQAFTVYTNDQLLKAEQ 240 +PAVRI+++P L GI D+R +A T N+PKG ++ + + +Y NDQ A + Sbjct: 181 SQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGLLEDQDRNWQIYANDQAKTAAE 240 Query: 241 WNDMVLAWRNGAPIRVKDIGVAVDGPENNKIAAWAFSGAANTADHTITNGR-SIVLAITK 299 + +++++RNG P+RV+D+ D A+ + +NG+ S+++ I + Sbjct: 241 YAPLIVSYRNGTPVRVQDVAEVRDS-------------VADVRNAGSSNGKPSVLIIINR 287 Query: 300 QPGANVIETVGRIKAAMPRLRAAIPAAIHVNTLIDRTQTIRASVEDVEFTLVLTIALVVM 359 QPGAN+I+TV ++ +P+L+A+IP+AI + ++DRT TIRAS+++ EFTL+L++ALV+M Sbjct: 288 QPGANIIDTVDNVRELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLILSVALVIM 347 Query: 360 VIFVFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVDDAIVML 419 V+F+FLRN ATLIP+V VP++++GT GVMY+ G+SLDNLSLMALTIA GFVVDDAIV+L Sbjct: 348 VVFLFLRNARATLIPAVAVPVSLIGTFGVMYLAGFSLDNLSLMALTIATGFVVDDAIVVL 407 Query: 420 ENIYRYVEEGMTPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTV 479 ENI R++E GM P +AAL GA E+GFT++S+S+SL+AVFIP+L+M GIVGRLFREFA+T+ Sbjct: 408 ENISRHIESGMKPYKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITL 467 Query: 480 TLTIGVSVIISLTLTPMLCSRFLK-----NEHGRQHGKLYQWFERC-------FDAMLNG 527 ++ I VS+++SLT TPM+C++ L+ +E RQ + + W ++ F+ ML Sbjct: 468 SVAILVSLVVSLTTTPMMCAQLLRHDPAADEARRQ--RRHPWLQKIADQSAAIFEDMLLA 525 Query: 528 YKRGLDVVMRHQFITLMSFIATVALTVALFIFIPKGFFPQQDNGVIVGFAESSQDTSSAA 587 Y+R L +R + ++ +AT+AL V L+ IPKGFFPQQD G +VG Q S A Sbjct: 526 YQRTLAWALRAAPLMMLILLATIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQA 585 Query: 588 MHERLLKVAEVVRQDP---DVIGFAMSAGSTTFNTGQFFIALKPKDEGRTTNADEIIARL 644 M +L + ++VR DP DV+ F G N G ++ LKP E R +AD+++ARL Sbjct: 586 MRTKLNEFIDIVRADPAVSDVVAFT---GGQRRNGGFMYVTLKPLSE-RKDSADKVVARL 641 Query: 645 RPKVARIEGVNLFMQASQDINVGGRLSRTQYQYTITDTDLDELNVWAPRMLERFRRLPQL 704 R K A++ G +F+ QDI +G R S +QY+Y++ D+ L +W P++ L +L Sbjct: 642 RIKTAKVAGARVFLVPVQDIRIGARQSDSQYEYSLKSDDVGLLRIWEPKIRLALSNLKEL 701 Query: 705 TDVASDQQNQAAAAVITIDRARASSFGISPSLIDATIYDAIGQRQVAQYFTQINSYHVIL 764 D+++DQQ+ +TIDR A G++P LID+T+ D GQRQ++ ++ +N YHV++ Sbjct: 702 EDISTDQQDNGLQTTLTIDRETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVM 761 Query: 765 EVTPQLQKDPSLFDKLYLT-------SPLTG----------------------------- 788 E PQ + P Y++ SP T Sbjct: 762 EAAPQYWQSPETLRDTYVSLAGSSNLSPTTSSLSTPPALSASGKLNANTGLAQTISTAPS 821 Query: 789 QQVPLSTFVKIDTSKTSYLSISHQSQFPAVTISFNLAKGVSLGEAVDVIQKTKDEMGVPQ 848 +Q+PL+ F + + + TS LS+SH+ QF A T+SFNLA+GVSL +A I + ++GVP Sbjct: 822 RQIPLAAFSRFEPTTTS-LSVSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPT 880 Query: 849 TLVGNFQGTAKAFGDSLSSQPYLIAAALIAVYIVLGLLYESYIHPLTILSTLPSAGVGAL 908 ++G F GTA AF S SSQP LI AL+AVYIVLG+LYES IHP+TI+STLPSAGVGAL Sbjct: 881 NVLGTFAGTANAFQSSTSSQPLLILTALLAVYIVLGILYESLIHPITIISTLPSAGVGAL 940 Query: 909 LILMIGGYDLSVIALIGIILLIGIVKKNGIMMIDFALTAERTQGMKPEQAIYQACLLRFR 968 L LM+ G D S+IALIG+ILLIGIVKKN IMM+DFA+ AER +GM P AI++AC LRFR Sbjct: 941 LALMVTGTDFSLIALIGVILLIGIVKKNAIMMVDFAIDAERNRGMSPRDAIFEACKLRFR 1000 Query: 969 PIMMTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLVLSQALTLFTTPVVYLYLDRAH 1028 PIMMTTM ALL +PL +GHG G+ELR+PLG ++VGGLV+SQ LTL+TTPVVYLY++R Sbjct: 1001 PIMMTTMAALLGAIPLAIGHGDGAELRQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLS 1060 Query: 1029 YWYERK--KKARQERKAA 1044 W +R+ +K + E AA Sbjct: 1061 SWSKRRFGRKNKTETSAA 1078 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 389 bits (1000), Expect = e-109, Method: Compositional matrix adjust. Identities = 303/1065 (28%), Positives = 529/1065 (49%), Gaps = 59/1065 (5%) Query: 7 FIKRPIGTTLLALAILLVGIAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMASNVAQP 66 FI RP+ +LA+ I+L G LPV+ P + PTI VTA PG + +T+ +V Sbjct: 5 FIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDSVTSL 64 Query: 67 LERQFSLIAGLSQMTSQSTL-GTTQITLQFDLNRSIDAAALDVQAAINASTGQLPANLPS 125 +E++ + GL + SQS G QIT+ F + D AA+DVQ + +LPA + Sbjct: 65 IEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPAAVTQ 124 Query: 126 PPTFRKINPADSPIMI---MSVQSDALPLTVVNDYADNILAQQISQISGVGLVNVNGQQK 182 ++ + S ++ +S L + DY + +I ++ GVG + G ++ Sbjct: 125 QGV--QVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGTER 182 Query: 183 PAVRIQVDPAKLATLGISLEDIRGVIATTTVNQPKGTVD-----GARQ-AFTVYTNDQLL 236 A+RI +DP KL L ++ D+ I GT+ G +Q A TV N QL Sbjct: 183 -AMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQLT 241 Query: 237 KAEQWNDMVL-AWRNGAPIRVKDIGVAVDGPENNKIAAWAFSGAANTADHTITNGRSIVL 295 EQ+ +++L A NGA +R++D+ A G + + S + Sbjct: 242 SPEQFGNIILRANANGATVRLRDV------------ARVEVGGQSYDTSGRLDGKPSSFI 289 Query: 296 AITKQPGANVIETVGRIKAAMPRLRAAIPAAIHVNTLIDRTQTIRASVEDVEFTLVLTIA 355 + P AN + T + M L P + D ++ ++ S+E+V TL+ I Sbjct: 290 GVQLSPTANALGTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIV 349 Query: 356 LVVMVIFVFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVDDA 415 LV +V+F+FL+N+ T+IP++ VP+A++GT + + G+S++ L++ + +A+G +VDDA Sbjct: 350 LVFLVMFLFLQNIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDA 409 Query: 416 IVMLENIYRYV-EEGMTPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFRE 474 IV++EN+ R + EEG++P +A K G+I +I I++ L+AVFIP+ GG VG ++R+ Sbjct: 410 IVVVENVERIMSEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQ 469 Query: 475 FAVTVTLTIGVSVIISLTLTPMLCSRFLKN-EHGRQHGK--LYQWFERCFDAMLNGYKRG 531 F++++ ++ SV+++ TLTP LC+ LK E G H K + WF R F++ +GY+ Sbjct: 470 FSLSMVASMVFSVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGI 529 Query: 532 LDVVMRHQFITLMSFIATVALTVALFIFIPKGFFPQQDNGVIVGFAESSQDTSSAAMHER 591 + ++ ++ ++ VA L++ +P F P +D G I+ + S++ Sbjct: 530 IGGMLNKAGRYMIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAV 589 Query: 592 LLKVAEVVRQDP------DVIGFAMSAGSTTFNTGQFFIALKP-KDEGRTTNADEIIARL 644 + ++ E +DP V+G++ S N F LK ++ +AD I + Sbjct: 590 VKQIEEYYLKDPAVEHAIAVLGYSFSGNGQ--NAALVFTPLKDWSQRDKSQSADAIAGKA 647 Query: 645 RPKVARIEGVNLFMQASQDI----NVGGRLSRTQYQYTITDTDLDELNVWAPRMLERFRR 700 ++I+ +F I N G R Q + + T L + ++L + Sbjct: 648 FGAFSQIKDAIVFPLNPPPIPELGNATGFTFRLQDRAGLGHTALVQAR---NQILGMASQ 704 Query: 701 LPQLTDVASDQQNQAAAAVITIDRARASSFGISPSLIDATIYDAIGQRQVAQYFTQINSY 760 L V + A + IDR +A++ G+ S I++ + A+G V + Sbjct: 705 SKVLAGVRPEGLEDAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQ 764 Query: 761 HVILEVTPQLQKDPSLFDKLYLTSPLTGQQVPLSTFVKIDTSK--TSYLSISHQSQFPAV 818 VI++ + + P LY + +G VP S FV T+K + + + +PA+ Sbjct: 765 RVIVQADAKRRLQPEDLTNLYARNS-SGTMVPFSAFV---TAKWINGPVQLIRYNGYPAM 820 Query: 819 TISFNLAKGVSLGEAVDVIQKTKDEMGVPQTLVGNFQGTAKAFGDSLSSQ--PYLIAAAL 876 I+ A G S GEA+ ++ ++ P F+ T ++ + S P L A +L Sbjct: 821 KIAGGAAPGRSTGEAMAEMESFVAKL--PPGF--GFEWTGQSLEEKTSGNQAPALYALSL 876 Query: 877 IAVYIVLGLLYESYIHPLTILSTLPSAGVGALLILMIGGYDLSVIALIGIILLIGIVKKN 936 IAV++VL LYES PL ++ +P +GALL + + V +G+I ++G+ KN Sbjct: 877 IAVFLVLAALYESTSIPLAVMLVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKN 936 Query: 937 GIMMIDFALTAERTQGMKPEQAIYQACLLRFRPIMMTTMCALLSGLPLMLGHGAGSELRR 996 I++I+FA + QG +A +A LRFRPI+MT++ +L LPL + GAGS +R Sbjct: 937 AILIIEFAKDLQ-AQGKGLIEATLEAVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQR 995 Query: 997 PLGYAMVGGLVLSQALTLFTTPVVYLYLDRAHYWYERKKKARQER 1041 +G ++GG++ + L +F P+ ++ + + ER++K E Sbjct: 996 AIGTGVMGGMITATVLAVFLVPIFFVVVRKIFKGSERQRKFDAEH 1040 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 382 bits (981), Expect = e-107, Method: Compositional matrix adjust. Identities = 310/1056 (29%), Positives = 535/1056 (50%), Gaps = 53/1056 (5%) Query: 7 FIKRPIGTTLLALAILLVGIAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMASNVAQP 66 FI RPI ++AL I+L G+ LP+A P V PT+ + A PG +P+TM V Sbjct: 5 FIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDGVISL 64 Query: 67 LERQFSLIAGLSQMTSQS-TLGTTQITLQFDLNRSIDAAALDVQAAINASTGQLPANLPS 125 +ER+ S + L S + T GT QI++ F + A +DVQ + A +LP + Sbjct: 65 IERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQTVRQ 124 Query: 126 PPTFRKINPADSPIMIMSVQS-----DALPLTVVNDYADNILAQQISQISGVGLVNVNGQ 180 + + A S ++++S+ S D + L NDY + +++ ++ GVG V + G Sbjct: 125 NGVTVE-SAASSFLLMVSLTSVDGRYDEVRL---NDYLARNIVEELRRMEGVGRVQLFGA 180 Query: 181 QKPAVRIQVDPAKLATLGISLEDIRGVIATTTVNQPKG------TVDGARQAFTVYTNDQ 234 ++ A+RI +DP KL G+++ DI I+ G V G + A + Q Sbjct: 181 EQ-AMRIWLDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQ 239 Query: 235 LLKAEQWNDMVL-AWRNGAPIRVKDIGVAVDGPENNKIAAWAFSGAANTADHTITNGRSI 293 L Q+ +VL A +G+ + + D+ G ++ +AF+ N + Sbjct: 240 LQSPAQFAAIVLKAKADGSRVLLGDVARVELGAQS-----YAFANRENGKPAGVA----- 289 Query: 294 VLAITKQPGANVIETVGRIKAAMPRLRAAIPAAIHVNTLIDRTQTIRASVEDVEFTLVLT 353 A+ PGAN + T I+A M LR ++P + + + ++ S++ V TL+ Sbjct: 290 --AVQLSPGANAVRTAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEA 347 Query: 354 IALVVMVIFVFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVD 413 + LV +V+++FL+NV T+IP++ P+A++GT VM + GYS++ L++ + +A+G +VD Sbjct: 348 MVLVFLVMYLFLQNVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVD 407 Query: 414 DAIVMLENIYRYV-EEGMTPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLF 472 DAIV++EN+ R + EG+ P EA +K GEI II I++ L AVFIP+ L GG VG ++ Sbjct: 408 DAIVVVENVERIMAHEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIY 467 Query: 473 REFAVTVTLTIGVSVIISLTLTPMLCSRFLKNEHGRQHGK--LYQWFERCFDAMLNGYKR 530 R+F+V + ++I S ++L+LTP LC+ L+ H K + F R F+ + Y+ Sbjct: 468 RQFSVAMAVSILFSAFLALSLTPALCATLLRPVPAGHHDKRGFFGAFNRAFNRLTARYES 527 Query: 531 GLDVVMRHQFITLMSFIATVALTVALFIFIPKGFFPQQDNG-VIVGF---AESSQDTSSA 586 L ++ ++ + A L V +P F P++D G + F A+++ + ++ Sbjct: 528 ALGRLIARGLRMMLVYAALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTAR 587 Query: 587 AM--HERLLKVAEVVRQDPDVIGFAMSAGSTTFNTGQFFIALKP-KDEGRTTNADEIIAR 643 A+ ER LK E + + V+GF S N F LK K+ +T+A E +A Sbjct: 588 AVDQFERYLKGREDIGANLSVLGFGFSGSGP--NAAMAFTELKDWKERKGSTSAAEAMAA 645 Query: 644 LRPKVARIEG--VNLFMQASQDI-NVGGRLSRTQYQYTITDTDLDELNVWAPRMLERFRR 700 + ++G ++L A +++ N G R Q + L + + R+ Sbjct: 646 QAAMESGVDGMVMSLLPPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSRK 705 Query: 701 LPQLTDVASDQQNQAAAAVITIDRARASSFGISPSLIDATIYDAIGQRQVAQYFTQINSY 760 L+ V SD A+ + IDR +A++ G+S S I T+ A+G V + Sbjct: 706 ---LSGVYSDGLPAGASVQLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQ 762 Query: 761 HVILEVTPQLQKDPSLFDKLYLTSPLTGQQVPLSTFVKIDTSKTSYLSISHQSQFPAVTI 820 VIL+ + KLY+ + +G VPL+ VK + + + + FPAV I Sbjct: 763 QVILQAQASARMQLEDVMKLYVRNQ-SGGMVPLAELVK-ASWREAPTQLQRYQGFPAVRI 820 Query: 821 SFNLAKGVSLGEAVDVIQKTKDEMGVPQTLVGNFQGTAKAFGDSLSSQPYLIAAALIAVY 880 S + A GV+ GEA+ +++ ++ P + G + S + P L+A +++ V+ Sbjct: 821 SGSAAPGVASGEAMAEMERLAQQL--PPGFAVAWTGQSLQERLSAAQAPMLMALSMLVVF 878 Query: 881 IVLGLLYESYIHPLTILSTLPSAGVGALLILMIGGYDLSVIALIGIILLIGIVKKNGIMM 940 +VL LYES+ PL+++ +P VGA+ +++ V +G+I +IG+ KN I++ Sbjct: 879 LVLAALYESWSIPLSVMLVVPLGLVGAVAAVILRDMPNDVFFKVGMITVIGLSAKNAILI 938 Query: 941 IDFALTAERTQGMKPEQAIYQACLLRFRPIMMTTMCALLSGLPLMLGHGAGSELRRPLGY 1000 ++FA R++GM +A +A +LR RPI+MT++ L +PLML GA +E +R +G Sbjct: 939 VEFARQL-RSEGMGLVEAAIKASVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGT 997 Query: 1001 AMVGGLVLSQALTLFTTPVVYLYLDRAHYWYERKKK 1036 + GG+V + L + PV ++ + RK + Sbjct: 998 GVFGGMVSATVLAVLFVPVFFVLVLGCAQRLARKGR 1033 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,851,523 Number of extensions: 114160 Number of successful extensions: 517 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 424 Number of HSP's successfully gapped: 12 Length of query: 1050 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 955 Effective length of database: 1,170,045 Effective search space: 1117392975 Effective search space used: 1117392975 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 136 (57.0 bits)