BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2123.p
         (138 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311802|ref|YP_003775894.1| extradiol dioxygenase [Herbaspi...   254   2e-69

>gi|300311802|ref|YP_003775894.1| extradiol dioxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 138

 Score =  254 bits (650), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 119/137 (86%), Positives = 126/137 (91%)

Query: 1   MQSIFHLAYHVRDLDQARRFYCDLLGCREGRSTDTWVDIDFFGHQLSLHLGQPFTVSNTG 60
           M SIFHLAYHVRDLD ARRFYCDLLGC+EGRSTDTWVDIDFFGHQLSLHLG+PF VSNTG
Sbjct: 1   MSSIFHLAYHVRDLDAARRFYCDLLGCQEGRSTDTWVDIDFFGHQLSLHLGEPFAVSNTG 60

Query: 61  QVGHHLVPMPHLGVILPMQHWQQLADRLTASAAVQFVLAPQIRFAGEPGEQATMFFLDPS 120
           +VGHH+VPMPHLGVILPM  WQ LADRL+ASA VQFVLAPQIRFAGEPGEQATMFF DPS
Sbjct: 61  KVGHHMVPMPHLGVILPMPQWQALADRLSASAQVQFVLAPQIRFAGEPGEQATMFFCDPS 120

Query: 121 GNPIEIKGFKNLDTVYA 137
           GNPIE+KGF +L  VYA
Sbjct: 121 GNPIEVKGFADLQQVYA 137


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 473,636
Number of extensions: 19798
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,260,010
Effective search space: 78120620
Effective search space used: 78120620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)