BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2121.p
         (416 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311804|ref|YP_003775896.1| iron-regulated membrane protein...   728   0.0  
gi|300311746|ref|YP_003775838.1| iron-regulated membrane protein...   236   3e-63

>gi|300311804|ref|YP_003775896.1| iron-regulated membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 416

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/416 (84%), Positives = 378/416 (90%)

Query: 1   MRALLVLLHRWFGLAVAVFLFIAGVTGALISWDHELDAWLNPQLFDAHSAQGPVAGQPLP 60
           MRA LVLLHRWFGLA AVFLFIAG+TGA+ISWDHELDAWLNPQLFDA SA  P AG P+P
Sbjct: 1   MRATLVLLHRWFGLAAAVFLFIAGLTGAVISWDHELDAWLNPQLFDARSATQPGAGAPMP 60

Query: 61  GLELARRVEAAEPALRVTYVLTETEPGHTSNMMVEPRIDPATGKLYHLDYNQIAVDPVTA 120
           GLELARRVE AEP LRVTYVLT+ EPGHT  MMVEPR+DPATGKLY LDYNQIAVDP TA
Sbjct: 61  GLELARRVEQAEPRLRVTYVLTQAEPGHTIGMMVEPRVDPATGKLYTLDYNQIAVDPFTA 120

Query: 121 EIQGRRMWGAISLSRENLLPFLYKLHYTMHLPEVGGIETGIWLMGIIGIVWSLDCFIALY 180
           EIQGRRMWGAISLSRENLLPFLYKLHYTMHLP++GG+ETGI LMGIIGIVW+LDC IALY
Sbjct: 121 EIQGRRMWGAISLSRENLLPFLYKLHYTMHLPDLGGLETGILLMGIIGIVWALDCLIALY 180

Query: 181 LSFPNWRSWRKSFVFRWRDGGHKLQFDLHRSGGVWIWVLLLVLAVSSVSMNLEGQVMRPI 240
           LSFPNWRSWRKS  FRWRDGGHKL FDLHRSGGVW+W LLL+LAV+SVSMNLE QVMRP+
Sbjct: 181 LSFPNWRSWRKSLAFRWRDGGHKLNFDLHRSGGVWVWGLLLILAVTSVSMNLERQVMRPL 240

Query: 241 LQTFSTLTASPFDTRTPLAPEKVPQPRISREQAVVLGREQGHKLGLTEPVGGVFYSGMFG 300
           LQT STLT SPFDTRTP APEKV +PRI+REQAV LG+ Q  K+GLTEPVGGVFYSGMFG
Sbjct: 241 LQTLSTLTPSPFDTRTPTAPEKVAEPRITREQAVALGQAQARKMGLTEPVGGVFYSGMFG 300

Query: 301 VYGVGFFQPGNDHGDVGLGNAWLYFDAMSGAYEGGKIPGRGSAGDIFLQAQFPLHSGRIL 360
           VYGVG+FQPGNDHGD+GLGNAWLYFDA SGAYEGGKIPGRGSAGDIFLQAQFPLHSGRIL
Sbjct: 301 VYGVGYFQPGNDHGDIGLGNAWLYFDANSGAYEGGKIPGRGSAGDIFLQAQFPLHSGRIL 360

Query: 361 GLTGRVLISLMGVLVAMLSVTGVILWVRKRRARVQQRARLAEKKTPAREGPVTGLR 416
           GL GR+LIS MG LVAMLSVTGVI+WVRKR+AR+QQR R A +KTPAREGPV  L+
Sbjct: 361 GLPGRILISFMGALVAMLSVTGVIIWVRKRKARLQQRERTAAQKTPAREGPVAELQ 416


>gi|300311746|ref|YP_003775838.1| iron-regulated membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 435

 Score =  236 bits (602), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 145/417 (34%), Positives = 224/417 (53%), Gaps = 20/417 (4%)

Query: 2   RALLVLLHRWFGLAVAVFLFIAGVTGALISWDHELDAWLNPQLFDAHSAQGPVAGQPL-P 60
           R +LVLLHRW GL +A FL +  +TG+L+ +D ELDAWL PQL  A  A G  A   + P
Sbjct: 19  RHVLVLLHRWTGLGMAFFLIVTSLTGSLLVFDDELDAWLAPQLQLAQPAPGQSAQAMMDP 78

Query: 61  GLELARRVEAAEPALRVTYVLTETEPGHTSNMMVEPRIDPATGKLYHLDYNQIAVDPVTA 120
            L   +  +A  P + ++ ++    PG T +   +P  DPATGK Y L Y++I V+P T 
Sbjct: 79  YLLREKVAQAMGPQVHISQLVLHARPGRTVSFQADPATDPATGKPYRLGYDEILVNPYTG 138

Query: 121 EIQGRRMWGAISLSRENLLPFLYKLHYTMHLPEVGGIETGIWLMGIIGIVWSLDCFIALY 180
            +QG R    ISL   +L+PFL+KLH+++ LP       G  L+G +G++W+LDCF+ + 
Sbjct: 139 VVQGVRDRDKISLKPADLMPFLFKLHHSLALPRA----PGALLLGTVGLLWTLDCFVGMI 194

Query: 181 LSFPNWR----SWRKSFVFRWRDGGHKLQFDLHRSGGVWIWVLLLVLAVSSVSMNLEGQV 236
           L++P  R     W+ +++ +WR G +++  DLHR+ G+W WV+LL+ A SSV +NL  Q+
Sbjct: 195 LTWPRARPFLVKWKPAWLIKWRAGFYRVNLDLHRAFGLWCWVMLLLFAWSSVMLNLRDQI 254

Query: 237 MRPILQTFSTLTAS-----PFDTRTPLAPEKVPQPR-ISREQAVVLGREQGHKLGLTEPV 290
             P++    +   S     P        P+  P+   ++R       R++G  +   E +
Sbjct: 255 YLPVMSRILSFDTSWRPGPPLPQALSGPPQSWPEAHALARRTMDGFARQRGLVIDFEEKL 314

Query: 291 GGVFYSGMFGVYGVGFFQPGNDHGDVGLGNAWLYFDAMSGAYEGGKIPGRGSAGDIFLQA 350
               +    GVY        +   DV  GN  L  DA +G   G  +P     G+ F   
Sbjct: 315 D---FDRRRGVYIYLVHSNADLRADV--GNTGLRIDARTGKILGHWLPVGDRDGNTFSNW 369

Query: 351 QFPLHSGRILGLTGRVLISLMGVLVAMLSVTGVILWVRKRRARVQQRARLAEKKTPA 407
              LH G + GL  R+L+ L+G  V++L+VTGV++W +KR AR  Q     + + P+
Sbjct: 370 LGALHMGHVFGLPWRILLVLVGGAVSLLTVTGVVVWWKKRAARRLQLRSPGDGRKPS 426


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.141    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,447,210
Number of extensions: 66606
Number of successful extensions: 206
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 2
Length of query: 416
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 328
Effective length of database: 1,203,190
Effective search space: 394646320
Effective search space used: 394646320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)