BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2120.p (723 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310319|ref|YP_003774411.1| TonB-dependent siderophore rece... 266 3e-72 gi|300309869|ref|YP_003773961.1| TonB-dependent ferric sideropho... 209 6e-55 gi|300311911|ref|YP_003776003.1| TonB-dependent siderophore rece... 205 8e-54 gi|300309379|ref|YP_003773471.1| TonB-dependent ferric sideropho... 182 8e-47 gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore rece... 137 3e-33 >gi|300310319|ref|YP_003774411.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 723 Score = 266 bits (681), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 218/729 (29%), Positives = 348/729 (47%), Gaps = 59/729 (8%) Query: 28 GCPALAFAQSEQTGAADVAATASGNGQLPTVTVSAGGAGEGTQHLQSQTSAGALGSRSLL 87 G PA+ T AAD + + LPT+ V+A GA GTQ +S + AG LL Sbjct: 21 GLPAV-------TRAADTSDNQGQDQSLPTINVTASGA-TGTQA-RSASVAG-FDDAPLL 70 Query: 88 ETPFSITSITAGDIADKQLNKLGDLFYNEASVSDNSAGYSAWASYITIRGLPADWQNSFR 147 +TP S++ +T+ + D+Q L D+ N+AS+++N A + ++ +IRG D +++R Sbjct: 71 DTPASVSVVTSAQMKDQQSRLLSDVVKNDASINENYAPVGYYENF-SIRGFTLDPASAYR 129 Query: 148 IDGKPFLGYGITLPYDHFERIDLLKGSAGFMYGFGSPGGVLNYVTKKPTDTPLRSMSVGY 207 ++G G T+ ++ ER++ LKG AG G + GG++NYVTK+P + +RS+++G Sbjct: 130 VNGLTVAGEQ-TIALENKERVEFLKGVAGLQAGVVAAGGLVNYVTKRPAN--VRSITLGT 186 Query: 208 TSNNIWSEHVDLGGRFGKDHMFGYRLNVTHDQGETF-NEGHIRRNSASL----ALDGRLT 262 SN DLG FG+ FG R+N H+ ++ + G R+ ASL A+ R Sbjct: 187 DSNGSRYLATDLGALFGEHKQFGLRINAAHEDIHSYVSNGDGWRDFASLSATWAISARTL 246 Query: 263 RELTWDFQAIWQNSNSTDQTPSFVTSSLAGGRLPSVVSGTDKNLAGP-GQHLDTNFQFYQ 321 + ++Q Q S + Q L G LPS VS + P Q + + + Sbjct: 247 VQFDAEYQQKAQRSVAGYQL-------LGGATLPSGVSPSTMLTPQPWSQPVRDSSVNAR 299 Query: 322 TGLTYRLNPDWKANLSYSHSTAKRFRNEDIAMLSDAAGNYS-------------DWRSDS 368 + N DW+ Y + R +D +GN + D+R + Sbjct: 300 LRIDTEFNADWRG---YVQAGRSRAVIDDYLAFPYGSGNGASPTFAANGDFDVYDYRVPN 356 Query: 369 REGHTFDQWQAMLEGNARTGSIDHQLVLGASWQKQVNDYSISSVYQQIGSGNLYVQNTNA 428 E D+ QA+ G +G + H+L LG + +++ D S + +G GN+Y Sbjct: 357 DERRN-DEVQAVAIGKFASGWVQHELTLGMAMSRRIVDKS-DGISVLVGQGNIYNGTPVL 414 Query: 429 YFSNTDLQT-YHNAIITQQAIFASDTLNFSQRWSLLAGGRYNQFKQDNNTTSGALSSRYD 487 +N + Y N Q+A+F SD + FSQRW +LAGGR + + ++GA++ Sbjct: 415 PAANAVIPAAYRNLDSRQKALFFSDRMQFSQRWQVLAGGRQVWLNEQSFNSTGAVTRDTS 474 Query: 488 KSALTPTVALMFKPESNTTLYTSYVESLEQGGVPGVTNTNYGSQLKPLKSKQYEIGAKTD 547 ++ P +AL+FKP N +LY SY E+L G +N+ L P ++Q E G K + Sbjct: 475 RNLFLPQLALIFKPVQNLSLYGSYAETLSLGSSAPFWVSNFPVTLPPSVARQLEAGVKYE 534 Query: 548 -QQNWSATAALFRIERASEYTLDG------ALVQNGQSNYQGLELGAAYRPTSQWQVGGS 600 + TAA+FR +A EY VQ GQ G+ELGA + T + +G + Sbjct: 535 FSPELALTAAVFRTRKAYEYQKPDNSPTGFTYVQQGQQTNTGVELGANGKLTPRLAIGAA 594 Query: 601 LMLLDAKYERGNT--FNGNRVAGAPRNMATAQVAYLVPQVAGLKLSADAKFTGSTMVSAA 658 +L A+ T F+ +V PR Y VP + G+ + ++ S + Sbjct: 595 ATVLRARASDTGTARFDDQQVVNVPRLRTAVYADYAVPGMEGVNVMGSWNYSASKPATRD 654 Query: 659 NDIELASYTLFNLGASYTTRIGQHDTTFRAAVNNVLDKRYW----QYQYENYIKPGDPRT 714 + L + +FN G Y R+ H T RA ++N+ DKRYW QY + Y+ G PRT Sbjct: 655 GSVNLPAVHVFNAGLRYQLRVNGHAATLRANIDNLFDKRYWKDAGQYLGDGYVHLGAPRT 714 Query: 715 FSVSAKVDF 723 +S + DF Sbjct: 715 ARLSLQYDF 723 >gi|300309869|ref|YP_003773961.1| TonB-dependent ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 725 Score = 209 bits (532), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 226/756 (29%), Positives = 343/756 (45%), Gaps = 81/756 (10%) Query: 4 SSLRARPCVMSRALRPVFISMALAGCPALAFAQSEQTGAADVAATASGNGQLPTVTVSA- 62 S L RP +++A R + + LA PA AFAQ T + + LPTVTV+ Sbjct: 15 SPLCTRPTAVAQAARLLVLGTLLA-APA-AFAQDSGT---------AQDASLPTVTVTGR 63 Query: 63 GGAGEGTQHLQSQTS----AGALGSRSLLETPFSITSITAGDIADKQLNKLGDLFYNEAS 118 G + Q + G LG++ +L+TPFS + T I + Q +GD+ +EAS Sbjct: 64 SDTGLPAAYAGGQVARGGGLGVLGTQDVLDTPFSTLNYTVEGIKNLQARTVGDVITSEAS 123 Query: 119 VSDNSAGYSAWASYITIRGLPADWQNSFRIDGKPFLG-YGIT----LPYDHFERIDLLKG 173 V N+ G + IRGLP ++ F G YG+ + ER+++LKG Sbjct: 124 VR-NTNGDGGFGDSYQIRGLPVS------VNDTGFNGLYGLVSLSRMSTAMLERVEVLKG 176 Query: 174 SAGFMYGFGSPGG---VLNYVTKKPTDTPLRSMSVGYTSNNIWSEHVDLGGRFGKDHMFG 230 MYG G GG +N V+K+ + P+ S++ Y + D+G RFG+D +G Sbjct: 177 PGTLMYGMGPAGGVGGAINLVSKRAGEEPVSSLTATYVGSAQLGLQGDIGRRFGQDKEWG 236 Query: 231 YRLNVTHDQGET-FNEGHIRRNSASLALDGRLTRELTWDFQAIWQNSNSTDQTPSFVTSS 289 R+N + G T + +++ SLALD R+L W A Q+ ++ + P F S Sbjct: 237 IRVNALYADGRTSVADNRQQQSMGSLALD-YTGRKLRWTLDAYTQHEDTRNFRPQF---S 292 Query: 290 LAGGRLPSVVSGTDKNLAGPGQHLDTNFQFYQTGLTYRLNPDWKA--NLSYSH-STAKRF 346 + +PS +G D NL PG L + + T L Y L A + Y +TA+ F Sbjct: 293 IGTTSMPSAPAG-DSNLY-PGNTLQIDDKVVATRLEYDLTEQLTAYGAIGYHEGATAQSF 350 Query: 347 RNEDIAMLSDAAGNYSDWRSDSREGHTFDQ------WQAMLEGNARTGSIDHQLVLGASW 400 + I L D + R G+ +DQ L TG + H L + A+ Sbjct: 351 PSATITGL--------DGATSVRNGY-YDQKVVSTSADVGLRARFATGPVQHTLSMAANT 401 Query: 401 QKQVNDYSISSVYQQIGSGNLYVQNTNAYFSNTDLQTYHNAIITQQAIFASDTLNFSQRW 460 Q Y + S NLY A + + + + +DTL+ + Sbjct: 402 LDQQTSYFYFVNATGVAS-NLYQPAPLAPVTAARGEPLPQSQTRLSGLALTDTLSIADGR 460 Query: 461 SLLAGGRYNQFKQDNNTTSGALSSRYDKSALTPTVALMFKPESNTTLYTSYVESLEQGGV 520 LL GG +Q + S + S +K +P + ++ KP N +LY +Y L GG Sbjct: 461 LLLTGGLR---RQQVYSNSFSTRSSSNKIGYSPVLGVVVKPLENLSLYANYTAGLSAGGF 517 Query: 521 PGVTNTNYGSQLKPLKSKQYEIGAKTDQQNWSATAALFRIERASEYTLDGALV------- 573 G N G P K+KQYE G K D + TAA+F+IERA+ T A+V Sbjct: 518 AGAQYANAGQAFAPYKTKQYESGVKLDWGRVTTTAAVFQIERANSST---AVVGSQTFAT 574 Query: 574 QNGQSNYQGLELGAAYRPTSQWQVGGSLMLLDAKYER------GNTFNGNRVAGAPRNMA 627 Q+G++ +GLEL +AY + Q G LM +E G T +G + P++ Sbjct: 575 QDGRARVRGLEL-SAY---GEAQRGLRLMASGTFFETRQSHTVGGTNDGKEIGAVPKHNF 630 Query: 628 TAQVAYLVPQVAGLKLSADAKFTGSTMVSAANDIELASYTLFNLGASYTTRIGQHDTTFR 687 + P + GL L+ TG++ S AN +++ +T +LGA YT+R+G T+R Sbjct: 631 NLGADWDTPWLQGLALNTRIINTGASWYSDANTVKVPGWTRMDLGARYTSRLGGQTITYR 690 Query: 688 AAVNNVLDKRYWQYQYENYIKPGDPRTFSVSAKVDF 723 A + N+ DK YW Q Y G RT +SA+VDF Sbjct: 691 ANLENLFDKHYWIMQ-NGYAGYGAGRTLVLSAQVDF 725 >gi|300311911|ref|YP_003776003.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 733 Score = 205 bits (522), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 224/756 (29%), Positives = 339/756 (44%), Gaps = 80/756 (10%) Query: 17 LRPVFISMAL---AGCPALAFAQSEQTGAADVAATASGNGQLPTVTV--SAGGAGEGTQ- 70 L P+ ++AL A PALA AQ ATA LPTVTV SA + +G Sbjct: 9 LHPLAAAVALIFLAPLPALAQAQ----------ATAPDQQTLPTVTVNASADASADGLPA 58 Query: 71 -----HLQSQTSAGALGSRSLLETPFSITSITAGDIADKQLNKLGDLFYNEASVSDNSAG 125 + + G LG+ L++P + T IAD+Q + +GD+ N+ V + G Sbjct: 59 EFAGGQVARGSRLGVLGNVDNLDSPVRSVAYTQQLIADQQAHGVGDVLKNDPVVR-TTRG 117 Query: 126 YSAWASYITIRGLPADWQNSFRIDGKPFLGYGITLPYDH-----FERIDLLKGSAGFMYG 180 + + IRG A+ + +G +GI LP + ER+++ G++ F+ G Sbjct: 118 FGNFQESYMIRGFIAN-SDDLMYNGL----FGI-LPRQYVASEMMERVEVQYGASAFLNG 171 Query: 181 FGSPG-----GVLNYVTKKPTDTPLRSMSVGYTSNNIWSEHVDLGGRFGKDHMFGYRLNV 235 +PG G +N V K+ + PL +++GY S N +D+ RFG G R+N Sbjct: 172 -ATPGDAGLGGTINIVPKRAANEPLTDLTLGYESGNSQYAALDVSRRFGPQERLGVRINA 230 Query: 236 THDQGETFNEGHIRR-NSASLALDGRLTR-ELTWDFQAIWQNSNSTDQTPSFVTSSLAGG 293 G T R N SL +D R L+ D Q +N ++ PS VT Sbjct: 231 ARHAGGTGVANERRETNLFSLGVDYRGNDFRLSADLG--LQENNLSNVRPS-VTIGAGLT 287 Query: 294 RLPSVVSGTDKNLAGPGQHLDTNFQFYQTGLTYRLNPDWKANLSYSHSTAKRFRNED--- 350 LP SG+ N P + + F T R D ++ + + R E+ Sbjct: 288 SLPVAPSGS-ANYGQPWSYSNARDLFG----TVRGEWDLSSSTTAWAAFGARQGTENNSL 342 Query: 351 --IAMLSDAAGNYSDWRSDSREGHTFDQWQAMLEGNARTGSIDHQLVLGASWQ--KQVND 406 + + + + G + +R D+ + + + +TG++ H+LV AS N Sbjct: 343 SGVRVTNASTGAAATYRFDNARQDDVATGEVGVRTHLQTGAVSHKLVAAASAYSLNSRNA 402 Query: 407 YSISSVYQQIGSGNLYVQNTNAYFSNTDLQTYHNAIITQQAIF--------ASDTLNF-S 457 Y +S Y + NLY TN ++ L + N++ Q SDTL F Sbjct: 403 YGLSPSYAL--ATNLY-NPTN--YAQPALTSLGNSLADPQTTIKTNLLSAVVSDTLGFYD 457 Query: 458 QRWSLLAGGRYNQFKQDNNT-TSGALSSRYDKSALTPTVALMFKPESNTTLYTSYVESLE 516 R + G R Q K D + A ++ YD+SA +P ++FK ++Y +Y+E L+ Sbjct: 458 DRVLVTVGVRQQQLKSDTYAYNTQANTAHYDQSATSPMAGVVFKLTKTLSVYGNYIEGLQ 517 Query: 517 QGG-VPGVTNTNYGSQLKPLKSKQYEIGAKTDQQNWSATAALFRIERASEY--TLDGALV 573 QG + T NYG L P KSKQ E+G K + AA F +R Y + Sbjct: 518 QGKQITDTTAANYGQVLAPYKSKQKEVGVKYELGGLGLGAAFFTTDRPLSYKDAVTNIEA 577 Query: 574 QNGQSNYQGLELGAAYRPTSQWQVGGSLMLLDAKYERGNTF--NGNRVAGAPRNMATAQV 631 NG+ +G+EL A T ++ L LDAK + N+ NG G PR A A + Sbjct: 578 TNGKQRNRGVELTAYGEVTKGVRLLSGLTFLDAKQVQTNSSANNGKYAIGVPRVQANAGL 637 Query: 632 AYLVPQVAGLKLSADAKFTGSTMVSAANDIELASYTLFNLGASYTTRIGQHDTTFRAAVN 691 VP V GL L+ A +T + V AAN +E+ S+ ++LGA Y T IG H T RA+++ Sbjct: 638 EVDVPGVRGLTLNGRATYTSTQYVDAANQLEVPSWVRYDLGARYLTDIGGHAVTLRASID 697 Query: 692 NVLDKRYWQ----YQYENYIKPGDPRTFSVSAKVDF 723 NV ++ YWQ Y+ G+PRTFS S V F Sbjct: 698 NVANRNYWQSAGGASNSGYLVAGNPRTFSTSVSVAF 733 >gi|300309379|ref|YP_003773471.1| TonB-dependent ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 790 Score = 182 bits (462), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 194/698 (27%), Positives = 293/698 (41%), Gaps = 50/698 (7%) Query: 55 LPTVTVSAGG--AGEGTQHLQSQTSAGALGSRSLLETPFSITSITAGDIADKQLNKLGDL 112 LP VT+ A + +L + G LG+R++++ P + + T + D+Q + D Sbjct: 114 LPAVTIRAAADTSAYAGAYLARGGALGVLGNRAVMDIPLATLNYTNELLQDQQARTVADA 173 Query: 113 FYNEASVSDNSAGYSAWASYITIRGLPADWQNSFRIDGKPFLGYGITLPYDHFERIDLLK 172 N+AS+ ++ +Y IRG ++G L G +P ER+D+LK Sbjct: 174 VLNDASIRMLTSTGGFGETY-QIRGYGLT-SGDVGVNGLFGLASGNRMPAVMIERVDVLK 231 Query: 173 GSAGFMYGF---GSPGGVLNYVTKKPTDTPLRSMSVGYTSNNIWSEHVDLGGRFGKDHMF 229 G ++G GS GG +N VTK+ D PL ++ Y S VDLG RFG + Sbjct: 232 GPGTLLHGISPEGSIGGSINLVTKRAEDEPLTRLTALYQSRRQPGVQVDLGRRFGTQDAW 291 Query: 230 GYRLNVTHDQGE-TFNEGHIRRNSASLALDGRLTRELTWDFQAIWQNSNSTDQTPSFVTS 288 G R N +GE + G + +LALD R R W A Q NS+D P Sbjct: 292 GIRFNTVLRRGEASIAGGRQDAGAGALALDYR-GRGWRWSLDAYRQRENSSDFRPQV--- 347 Query: 289 SLAGGRLPSVVSGTDKNLAGPGQHLD----TNFQFYQTGLTYRLNPDWKANLSYSHSTAK 344 G LP V + A P LD F L R+ + LS + + Sbjct: 348 ----GFLPGVTALP----APPSGDLDFFSGNQLSFQDDALLTRVEVELSEQLSAYAAVGQ 399 Query: 345 RFRNEDIAMLS---DAAGNYSDWRSDSREGHTFDQWQAMLEGNARTGSIDHQLVLGASWQ 401 R + + DA+G S + A L A TG++ H + LG + Sbjct: 400 RRSATQQNLPTGSVDASGAGSVRNAYYDTASRTLSADAGLRLQAATGAVRHGVSLGVTRL 459 Query: 402 KQV--NDYSIS---SVYQQIGSGNLYVQNTNAYFSNTDLQTYHNAIITQQAIFASDTLNF 456 +Q N Y +S S Y +LY T S + +T ++ +DTL Sbjct: 460 RQQAGNAYLVSADSSAY------SLYAPATLPVISAARTEPRKAYDMTLDSLSLTDTLRL 513 Query: 457 SQ-RWSLLAGGRYNQFKQDN-NTTSGALSSRYDKSALTPTVALMFKPESNTTLYTSYVES 514 + R LL G R + D+ +T SGA S Y+ SA++P + L+ KP + +LY + Sbjct: 514 LEDRLQLLVGARRQSVRYDSFDTVSGAQLSSYEASAISPLLGLVVKPVAGLSLYANTTSG 573 Query: 515 LEQGGVPGVTNTNYGSQLKPLKSKQYEIGAKTDQQNWSATAALFRIERASEYTLDGALVQ 574 L +G + N G L P +S+Q E GAK D AA F+I+ S A Sbjct: 574 LTRGTIVPTGLANAGQVLAPYRSRQLEAGAKLDWGRVMTQAAWFQIDNPSAVITTQASTP 633 Query: 575 -------NGQSNYQGLELGAAYRPTSQWQVGGSLMLLDAKYER-GNTFNGNRVA-GAPRN 625 +G+ +GLEL A ++ S A+ R N N R A G P Sbjct: 634 ASSSYGYDGRQRNRGLELSAYGELMRGLRLLASATFYQARLLRTANGLNDGRTAPGVPLR 693 Query: 626 MATAQVAYLVPQVAGLKLSADAKFTGSTMVSAANDIELASYTLFNLGASYTTRIGQHDTT 685 A + + + GL S TG AAN + L S+T ++LG Y +R+G+ Sbjct: 694 AANLSLDWEPAGLPGLAFSGRMIHTGPVYYDAANTLRLPSWTRWDLGVRYRSRLGERPVV 753 Query: 686 FRAAVNNVLDKRYWQYQYENYIKPGDPRTFSVSAKVDF 723 +R V N+ + W + Y+ PRT +S +VD+ Sbjct: 754 WRLNVENLFNHSTWLLD-KPYVTVAAPRTVLLSMQVDW 790 >gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 137 bits (345), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 186/741 (25%), Positives = 302/741 (40%), Gaps = 73/741 (9%) Query: 16 ALRPVFI-SMALAGCPALAFAQSEQTGAADVAATASGNGQLPTVTVSAGGAGEGTQHLQS 74 ALR + ++AL P++++A AD A G+ L + V+ G GE Q+ QS Sbjct: 5 ALRAAVLGALALGQTPSVSWA-------ADAAGKQEGD--LGEIVVT--GQGERQQYRQS 53 Query: 75 QTSAGALGSRSLLETPFSITSITAGDIADKQLNKLGDLFYNEASVSDNSAGYSAWASYIT 134 TS+ L E P S+ ++ I D +L D+ + V+ + W +Y + Sbjct: 54 STSSATRTETPLQELPQSVQVVSRQLIDDLAATRLDDVLLYVSGVARQNNFGGLWDNY-S 112 Query: 135 IRGLPADWQNSFRIDGKPFL---GYGITLPYDHFERIDLLKGSAGFMYGFGSPGGVLNYV 191 IRG I F GY + E +D LKG A +YG PGG +N V Sbjct: 113 IRGFSGSENGGMNILWNGFASNRGYAPPRDMANVESVDFLKGPAAALYGNSEPGGTINVV 172 Query: 192 TKKPTDTPLRSMSVGYTSNNIWSEHVDLGGRFGKDHMFGYRLNVTHD-QGETFNEGHIRR 250 TKKP ++ + SN+ + VD G YRLN + +G ++ R Sbjct: 173 TKKPQFKSANALDLSIGSNDAYRSAVDSTGALSS--TVAYRLNAAMEHKGSMRDQVRSER 230 Query: 251 NSASLALDGRLTRELTWDFQA-IWQNSNSTDQTPSFVTSSLAGGRLPSVVSGTDKNLAGP 309 + A LT +++ + D+ V + G LP + L P Sbjct: 231 EFFAPAFTWLLTENTILNYEGEFLRQKAPLDR--GIVAVNGNAGVLP-----VSRFLGEP 283 Query: 310 GQ-HLDTNFQFYQTGLTYRLNPDW--KANLSYSHSTAKRFRNEDIAMLSDAAGNYSDWRS 366 + Q + L RLN +W + + + + + E A+ +D A R Sbjct: 284 NDGDIKMQNQNHLLTLEQRLNENWHLRTGIFHKEGSLDGYSTEAFALQADNATLRRQRRY 343 Query: 367 DSREGHTFDQWQAMLEGNARTGSIDHQLVLGASWQKQVNDYSISSVYQQIGSGNLYVQNT 426 H QA + G T + H++++G +V+ ++ +I N+ Sbjct: 344 RDYSWHD-TSLQAEIGGKFATAGVGHEVLVGT----EVDWLTLDQRMLRINPSNVAPYAV 398 Query: 427 NAY-----------FSNTDLQTYHNAIITQQAIFASDTLNFSQRWSLLAGGRYNQFKQD- 474 N Y +NTD T I T ++ D L+ S+RW LLAG R + F+ Sbjct: 399 NIYNPVYGQAQPTPTANTD--TSERQIST--GLYLQDQLSLSERWRLLAGVRADAFRSTL 454 Query: 475 NNTTSGALSSRYDKSALTPTVALMFKPESNTTLYTSYVESLEQGGVPGVTNTNYGSQLKP 534 NN +GA+ +R DK A +P + L + + ++Y S +S P + G+ P Sbjct: 455 NNLRNGAV-TRQDKHAYSPRLGLTYLLTPSWSVYVSASKSFR----PNSGSDVSGNAFSP 509 Query: 535 LKSKQYEIGAK--TDQQNWSATAALFRIERASEYTLDGA----LVQNGQSNYQGLELGAA 588 S+ E G K ++ + AT A+F I + + T D A + G+ +G+EL A Sbjct: 510 ETSRAAEAGLKFQSEDKRSGATLAVFDITKQNVLTTDPANPNFSIAAGEVRSKGVELDAN 569 Query: 589 YRPTSQWQVGGSLMLLDAKYERGNTFN-GNRVAGAPRNMATAQVAYLVPQVAGLK--LSA 645 R W+V G+L DA R NT G+R+ PR+ A+ + G + Sbjct: 570 ARLGHHWRVTGNLAYTDAYVSRDNTLPVGSRLVNIPRSSASLLAVFEDADAHGAPYGVGG 629 Query: 646 DAKFTGSTMVSAANDIELASYTLFNLGA--SYTTRIGQHDTTFRAAVNNVLDKRYWQYQY 703 + G A L SY A +T ++ VNN+ +KRY+ Y Sbjct: 630 GLNYVGRRTGDQAGSFMLPSYVTARALAYWQFTPKM-----KLSLDVNNLFNKRYYSSSY 684 Query: 704 EN-YIKPGDPRTFSVSAKVDF 723 + +I PGD R +++ + F Sbjct: 685 NSLWIMPGDERNATLALNIKF 705 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.130 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,361,629 Number of extensions: 103765 Number of successful extensions: 387 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 336 Number of HSP's successfully gapped: 19 Length of query: 723 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 631 Effective length of database: 1,184,250 Effective search space: 747261750 Effective search space used: 747261750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)