BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2119.p (93 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312023|ref|YP_003776115.1| hypothetical protein Hsero_2711... 74 3e-15 gi|300310251|ref|YP_003774343.1| hypothetical protein Hsero_0918... 73 5e-15 gi|300309625|ref|YP_003773717.1| hypothetical protein Hsero_0283... 66 4e-13 gi|300312708|ref|YP_003776800.1| hypothetical protein Hsero_3411... 65 1e-12 gi|300310095|ref|YP_003774187.1| hypothetical protein Hsero_0760... 55 9e-10 >gi|300312023|ref|YP_003776115.1| hypothetical protein Hsero_2711 [Herbaspirillum seropedicae SmR1] Length = 173 Score = 73.6 bits (179), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 42/92 (45%), Positives = 54/92 (58%), Gaps = 2/92 (2%) Query: 1 MSRAIIRLDDPTSHGGVVQEGFANVKLYGKAMAGVGHRGYCPQCQCEFLILAGEETYEYL 60 MS AIIR D TSHGG V EG + + G A VGH YCP+C+ + I+ G + Sbjct: 1 MSSAIIRKGDSTSHGGTVLEGLVSFNVLGLPAALVGHMVYCPRCKGSYAIVEGVRHFRCG 60 Query: 61 GRQVAVEGMMTSCGAVLIATQ--YLARIAATP 90 G VAV GM T+CGA L A+Q +L +A+P Sbjct: 61 GNPVAVAGMKTACGAELQASQSAFLIGASASP 92 >gi|300310251|ref|YP_003774343.1| hypothetical protein Hsero_0918 [Herbaspirillum seropedicae SmR1] Length = 137 Score = 72.8 bits (177), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 52/88 (59%) Query: 1 MSRAIIRLDDPTSHGGVVQEGFANVKLYGKAMAGVGHRGYCPQCQCEFLILAGEETYEYL 60 MSR I + D TSHGG V G + ++GKA+A +G CP+C+ F I +G E Sbjct: 1 MSRPFITVGDKTSHGGTVISGDQSFLIHGKAVASIGDLTTCPRCKGTFAITSGAEDMITN 60 Query: 61 GRQVAVEGMMTSCGAVLIATQYLARIAA 88 G+ A +G T+CGA+LIATQ L AA Sbjct: 61 GKAPARDGDRTACGAILIATQALTTHAA 88 >gi|300309625|ref|YP_003773717.1| hypothetical protein Hsero_0283 [Herbaspirillum seropedicae SmR1] Length = 87 Score = 66.2 bits (160), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 39/79 (49%), Positives = 48/79 (60%), Gaps = 1/79 (1%) Query: 3 RAIIRLDDPTSHGGVVQEGFANVKLYGKAMAGVGHRGYCP-QCQCEFLILAGEETYEYLG 61 + +IRL+DPTSHGG V A V + GKA+A VG R CP Q +I+ G T E G Sbjct: 2 KGVIRLEDPTSHGGKVVSADARVAVRGKAVARVGDRCSCPVQGHVGCVIVEGHPTIEIDG 61 Query: 62 RQVAVEGMMTSCGAVLIAT 80 VA +G SCGAVLI+T Sbjct: 62 IAVAFDGHRISCGAVLIST 80 >gi|300312708|ref|YP_003776800.1| hypothetical protein Hsero_3411 [Herbaspirillum seropedicae SmR1] Length = 87 Score = 64.7 bits (156), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 2/80 (2%) Query: 3 RAIIRLDDPTSHGGVVQEGFANVKLYGKAMAGVGHRGYCPQCQCEFLIL--AGEETYEYL 60 RA+IRL D TSHGG V +K GK +A G CP+C+ +F I G T ++ Sbjct: 7 RAVIRLGDKTSHGGEVISASDTLKAMGKGVALEGDMTTCPKCKGQFAIQPGGGNSTRKHH 66 Query: 61 GRQVAVEGMMTSCGAVLIAT 80 G+QVA G T+CGA LIA+ Sbjct: 67 GKQVAYHGDTTTCGASLIAS 86 >gi|300310095|ref|YP_003774187.1| hypothetical protein Hsero_0760 [Herbaspirillum seropedicae SmR1] Length = 85 Score = 55.1 bits (131), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 1 MSRAIIRLDDPTSHGGVVQEGFANVKLYGKAMAGVGHRGYCPQCQCEFLILAGEETYEYL 60 MS+ +I L D TSHGG V + + GK +A VG + CP+ I +G+ T Sbjct: 1 MSQPVIVLGDKTSHGGTVIQASGVTMVGGKQVARVGDKVSCPR-HGSTTIASGDPTMIID 59 Query: 61 GRQVAVEGMMTSCGAVLIATQYLARI 86 G VA +G T+CGAVLIA+Q + Sbjct: 60 GAPVARDGDKTACGAVLIASQATTSV 85 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 287,709 Number of extensions: 9722 Number of successful extensions: 36 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 6 Length of query: 93 Length of database: 1,619,870 Length adjustment: 63 Effective length of query: 30 Effective length of database: 1,321,565 Effective search space: 39646950 Effective search space used: 39646950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 123 (52.0 bits)