BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2114.p (534 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311810|ref|YP_003775902.1| two component sensor histidine ... 788 0.0 gi|300311887|ref|YP_003775979.1| two component sensor histidine ... 113 3e-26 gi|300311808|ref|YP_003775900.1| two component sensor histidine ... 91 2e-19 gi|300313070|ref|YP_003777162.1| two component sensor histidine ... 86 9e-18 gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin... 81 2e-16 >gi|300311810|ref|YP_003775902.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 535 Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/532 (72%), Positives = 453/532 (85%) Query: 1 MRLLTRGLLIVAIPSLFEVLLLGALFKVQADAEEAERWAAHSAQVVNQAAEVREPMLLES 60 MRLLT+GLLIVAIP LFE++LL ALFK QADA +AERWAAHSA+V+N+AA+VREP+LLES Sbjct: 1 MRLLTKGLLIVAIPGLFEIVLLAALFKSQADAADAERWAAHSAEVINKAADVREPLLLES 60 Query: 61 ARIRNAILLDQTDPISRADMWAELEVKAGELARLVADNSAQSNAVRGVHEAIARYRTWAD 120 ARIRNAI++D PISR ++W +LE+K G+LARLV+DN QS++V+ + E + ++R WAD Sbjct: 61 ARIRNAIIIDDPSPISRPELWTDLEIKLGDLARLVSDNPEQSHSVQALRELVGQFRVWAD 120 Query: 121 SARERMSRGQREELIRQLRDEQGPHRLSEFLYRLDSFVAEERRLGTERTAQLQAARRSQT 180 SARERM RGQR+EL+RQLRDEQGPHRLS+FL RLD F+ EER LG+ R LQ+AR++QT Sbjct: 121 SARERMQRGQRDELVRQLRDEQGPHRLSDFLNRLDGFLNEERHLGSLRNQALQSARQTQT 180 Query: 181 WLLILAVLGSIVTAALASLAFTRSISRRIAVLITNAQRLADGQTLAARVGGNDEICQLDD 240 LI AV+GSI+ AALAS+AFTRSI RI+VLI NA+RLADG LAARV G+DEI LDD Sbjct: 181 AWLIAAVIGSILAAALASVAFTRSIGGRISVLIVNARRLADGLPLAARVKGHDEISLLDD 240 Query: 241 ALHRSSERLAEASRQALGYRQELEQRARELADVNHDLRQQTQDNEMFIYSVSHDLRSPLV 300 ALHRSSERL EAS+Q+ YR +LE+RAREL ++N DL QQTQDNEMFIYSVSHDLRSPLV Sbjct: 241 ALHRSSERLQEASQQSEQYRSQLERRARELTELNADLLQQTQDNEMFIYSVSHDLRSPLV 300 Query: 301 NLQGFSKEITHATRDLLDEVERLHLPEADRNRLRALVEEDIHTSLRFIQNAVTRSAGIID 360 NLQGFSKEI HAT DLL+ V+ L +P+AD+ +LR++V +DI +LRFIQNAVTRSAGIID Sbjct: 301 NLQGFSKEIGHATTDLLNAVQALPVPDADKAKLRSVVADDIQPALRFIQNAVTRSAGIID 360 Query: 361 AMLRLSRAGRVEYQPVMLDMHAIAQRIVSAMNGSIRAKAAQVEIEPDLPPAYGDPTSVEQ 420 +MLRLSRAGRVEYQPVMLDM+ IAQRIV+AM+GSIR K A VE+ P+LPPA+GDPT++EQ Sbjct: 361 SMLRLSRAGRVEYQPVMLDMNVIAQRIVAAMSGSIRDKGAVVEVAPELPPAFGDPTAIEQ 420 Query: 421 VLGNLVANAVNYLDPARQGHITIGHVRQADNIAAAPSLVTYFVRDNGLGIPAAYMDKMFI 480 VLGNLV NAVNYLDPAR G ITI H+R+ A P Y VRDNGLGIP AYM KMFI Sbjct: 421 VLGNLVGNAVNYLDPARPGRITIDHLREEGGAATGPETNVYVVRDNGLGIPPAYMHKMFI 480 Query: 481 AFQRLHGNAAKGEGIGLALVKRVVERHGGRIWVESVEGQGSCFFVALPARPP 532 AFQRLHGNAA GEGIGLALVKRVVERHGGRIWVES EGQGS F+VALPARPP Sbjct: 481 AFQRLHGNAAPGEGIGLALVKRVVERHGGRIWVESTEGQGSSFYVALPARPP 532 >gi|300311887|ref|YP_003775979.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 633 Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/271 (28%), Positives = 130/271 (47%), Gaps = 44/271 (16%) Query: 269 ELADVNHDLRQQ-------TQDNEMFIYSVSHDLRSPLVNLQGFSKEITHATRDLLDEVE 321 E+ +N DL++Q ++ E F YSVSHDLR+PL + G++ + D +DE Sbjct: 368 EIEALNADLKRQALHLHSVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYADAIDEKG 427 Query: 322 RLHLPEADRNRLRALVEEDIHTSLRFIQNAVTRSAGIIDAMLRLSRAGRVEYQPVMLDMH 381 R L+ I+ V + +I+ +L+L+++ E M Sbjct: 428 R--------------------EQLQVIRRNVRKMDELINDLLKLAKSTTGELTLERFSMD 467 Query: 382 AIAQRIVSAMNGSIRAKAAQVEIEPDLPPAYGDPTS---VEQVLGNLVANAVNYLDPARQ 438 + +++++ + + + D+PP G + + QV NL++NAV + + Q Sbjct: 468 DLVRQVIAGL------RRENPNVLFDVPPLEGAVANRGLITQVWENLLSNAVKFSSKSEQ 521 Query: 439 GHITIGHVRQADNIAAAPSLVTYFVRDNGLGIPAAYMDKMFIAFQRLH-GNAAKGEGIGL 497 + + ++ P Y V DNG+G Y K+F FQRLH G GIGL Sbjct: 522 PAVRV-------SMQVEPEEYIYGVHDNGVGFDMRYAHKLFGTFQRLHRQEEYAGTGIGL 574 Query: 498 ALVKRVVERHGGRIWVESVEGQGSCFFVALP 528 ALV+R+V RH GR+W +S G+G+ F+ +LP Sbjct: 575 ALVQRIVIRHTGRVWAQSKPGEGASFYFSLP 605 >gi|300311808|ref|YP_003775900.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 289 Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 91/315 (28%), Positives = 155/315 (49%), Gaps = 59/315 (18%) Query: 226 AARVGGNDEICQLDDALHRSSERLAEASRQALGYRQELEQRARELADVNHDLRQQTQDNE 285 A R G D + + D L + L EA + L E ++ AR AD L+ + Sbjct: 6 ALRAGVADVLPKTSDYL----DHLPEAVARVL----ETQRAARRQADSVTRLKDE----- 52 Query: 286 MFIYSVSHDLRSPLVNLQGFSKEITHATRDLLDEVERLHLPEADRNRLRALVEEDIHTSL 345 F+ ++SH+LR+PL + G+++ + + D ADR LV+ L Sbjct: 53 -FLATLSHELRTPLNAIVGWTQYLLNDHSD------------ADR-----LVK-----GL 89 Query: 346 RFIQNAVTRSAGIIDAMLRLSR--AGRVEYQPVMLDMHAIAQRIVSAMNGSIRAKAAQVE 403 + I+ A +++ +L +SR AG++ + +D+ ++A+ ++A+ + A+A Q+E Sbjct: 90 QVIERNARLQAQMVEDLLDMSRMLAGKLRLETRPMDLASVAEEAIAAVRPA--AEARQIE 147 Query: 404 IEPDLPPA---YGDPTSVEQVLGNLVANAVNYLDPARQGHITIGHVRQADNIAAAPSLVT 460 + P L GDP ++QV+ NL+ NA+ + RQG +++ +RQ D+ V Sbjct: 148 LHPALGQGGVILGDPARLQQVVWNLLMNAIKFT--PRQGRVSLS-LRQHDDT------VA 198 Query: 461 YFVRDNGLGIPAAYMDKMFIAFQR------LHGNAAKGEGIGLALVKRVVERHGGRIWVE 514 V DNG GI ++ +F F + G+ A G G+GLA+ + +VE HGG+I Sbjct: 199 LEVSDNGRGIKGEFLGSVFDRFTQEDVSTGSTGSTASGLGLGLAIARHLVELHGGQIRAA 258 Query: 515 SV-EGQGSCFFVALP 528 S G G+ F V LP Sbjct: 259 SAGPGMGAAFTVTLP 273 >gi|300313070|ref|YP_003777162.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 939 Score = 85.5 bits (210), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 111/251 (44%), Gaps = 33/251 (13%) Query: 287 FIYSVSHDLRSPLVNLQGFSKEITHATRDLLDEVERLHLPEADRNRLRALVEEDIHTSLR 346 + ++SHDLR+PL +L G + D+L RL ++D R Sbjct: 711 LLSAISHDLRTPLTSLVG--------SADVLAANARL--------------DDDARAMAR 748 Query: 347 FIQNAVTRSAGIIDAMLRLSR--AGRVEYQPVMLDMHAIAQRIVSAMNGSIRAKAAQVEI 404 I + G+++ +L ++R AG V + +A + + ++ + I Sbjct: 749 TISEQSQKMVGLMNNLLDMARLQAGVVTLNRQWNALEELAGSALRLLAKALEGRQVDTRI 808 Query: 405 EPDLPPAYGDPTSVEQVLGNLVANAVNYLDPARQGHITIGHVRQADNIAAAPSLVTYFVR 464 P+LP D +E+VL NLV NA+ Y P I+ HV D AP V V Sbjct: 809 APELPLLRVDAVLLERVLANLVENAIKYSPPGTPIGIS-AHVEHGDG---APQ-VKVCVM 863 Query: 465 DNGLGIPAAYMDKMFIAFQRLHG-NAAKGEGIGLALVKRVVERHGGRIWVESVE-GQGS- 521 D G G P F F R +A G G+GLA+ + ++E H GRIW+ E GQG+ Sbjct: 864 DQGRGFPPTMTQHAFEKFTRGDNESATPGVGLGLAICRAIIEAHQGRIWIAPQEAGQGAT 923 Query: 522 -CFFVALPARP 531 CF + + +P Sbjct: 924 VCFTLPVETQP 934 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 723 Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 120/249 (48%), Gaps = 36/249 (14%) Query: 287 FIYSVSHDLRSPLVNLQGFSKEITHATRDLLDEVERLHLPEADRNRLRALVEEDIHTSLR 346 F+ ++SH++R+P+ + G + L RL +A+ + +E+ H L Sbjct: 90 FLSTMSHEIRTPMNAVLGMAG---------LLRSTRLDTQQAEFAKA---IEDSAHALL- 136 Query: 347 FIQNAVTRSAGIIDAMLRLSR--AGRVEYQPVMLDMHAIAQRIVSAMNGSIRAKAAQV-- 402 GI++ +L S+ G+++ V D+ + + A++ R K ++ Sbjct: 137 ----------GIVNDVLDFSKIDVGKMDIAVVEFDLAKVVEASAEALSFKAREKRVRLLA 186 Query: 403 EIEPDLPP-AYGDPTSVEQVLGNLVANAVNYLDPARQGHITIGHVRQADNIAAAPSLVTY 461 ++ LPP GDP + Q+L NL+ NA+ + G + + QA + + V + Sbjct: 187 HLDSRLPPRLVGDPGRIRQILLNLLGNALKF---THAGEVLL--RVQALQVTSDHCRVRF 241 Query: 462 FVRDNGLGIPAAYMDKMFIAFQRLHGNAAK---GEGIGLALVKRVVERHGGRIWVESVEG 518 VRD+G+G+ + ++F F + + + G G+GL++ KR+VE GG I VES G Sbjct: 242 EVRDSGIGMDEDTLRRLFSPFAQADSSVTRQYGGTGLGLSICKRLVELMGGSIGVESALG 301 Query: 519 QGSCFFVAL 527 GSCF+ L Sbjct: 302 TGSCFWFEL 310 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.133 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,609,391 Number of extensions: 66293 Number of successful extensions: 499 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 478 Number of HSP's successfully gapped: 32 Length of query: 534 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 444 Effective length of database: 1,193,720 Effective search space: 530011680 Effective search space used: 530011680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)