BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2107.p (258 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311570|ref|YP_003775662.1| GntR family transcription regul... 488 e-139 gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 110 8e-26 gi|300313520|ref|YP_003777612.1| transcription regulator protein... 98 7e-22 gi|300313885|ref|YP_003777977.1| GntR family transcription regul... 92 5e-20 gi|300312626|ref|YP_003776718.1| GntR family transcription regul... 82 4e-17 >gi|300311570|ref|YP_003775662.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 488 bits (1257), Expect = e-139, Method: Compositional matrix adjust. Identities = 240/258 (93%), Positives = 245/258 (94%) Query: 1 MPHTSKPARPGASSDILNLAAAGLGPVRPERFAERVYETLFHAIVEGRIAVGSKLPSEND 60 MP+TSKPAR GASSDILNLAAAGLGPVRPERFAERVYETLFHAIVEGRI VGSKLPSEND Sbjct: 1 MPNTSKPARAGASSDILNLAAAGLGPVRPERFAERVYETLFHAIVEGRITVGSKLPSEND 60 Query: 61 LATLFEVSRPVVRQALDRLREDQLVESLRGSGTYVKEKAGLAPANPEGEPETRIGHIMNG 120 LATLFEVSRPVVRQALDRLREDQLVESLRGSGTYVKEK GLAPA P EPETRIGHIMNG Sbjct: 61 LATLFEVSRPVVRQALDRLREDQLVESLRGSGTYVKEKPGLAPAQPGAEPETRIGHIMNG 120 Query: 121 LELRLVLEPECAYMAALRRNRHDLDQMARLLEGFEEANRVGGIAHHYDYGFHEAIALATG 180 LELRLV+EPECA MAALRRNR DLD+M RLLEGFE ANRVGGIAHHYD+GFHEAIA ATG Sbjct: 121 LELRLVIEPECAAMAALRRNRQDLDRMERLLEGFEAANRVGGIAHHYDFGFHEAIATATG 180 Query: 181 NLRFVQVMKTLEYDVSHAVNMLRHLMHIPPWTRSQDAMDEHRQIFDLIRVQDAEGARRAM 240 NLRFVQVMKTLEYDVSHAVNMLRHLMHI PW RSQDAMDEHRQIF+LIRVQDAEGARRAM Sbjct: 181 NLRFVQVMKTLEYDVSHAVNMLRHLMHIAPWKRSQDAMDEHRQIFELIRVQDAEGARRAM 240 Query: 241 RGHIENARTRMFNSRPGL 258 RGHIENARTRMFNSRPGL Sbjct: 241 RGHIENARTRMFNSRPGL 258 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 110 bits (276), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 114/226 (50%), Gaps = 3/226 (1%) Query: 28 RPERFAERVYETLFHAIVEGRIAVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVES 87 +P+ ++ V L I G + G KLP+E+++ VSR VVR+A+ RL+ LVE+ Sbjct: 16 KPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVET 75 Query: 88 LRGSGTYVKEKAGLAPANPEGEPETRIGHIMNGLELRLVLEPECAYMAALRRNRHDLDQM 147 G GT+V E N + T + ++ LELR+ LE E A +AA RR L ++ Sbjct: 76 RHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETAGLAAARRTEEQLQEI 135 Query: 148 ARLLEGFEEANRVGGIAHHYDYGFHEAIALATGNLRFVQVMKTLEYDV--SHAVNMLRHL 205 L+ F + GG D+ FH AIA ATGN F++++ L V +N L Sbjct: 136 REALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRINTA-EL 194 Query: 206 MHIPPWTRSQDAMDEHRQIFDLIRVQDAEGARRAMRGHIENARTRM 251 H + EH I++ I DAE AR AMR H+ N+R R+ Sbjct: 195 AHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL 240 >gi|300313520|ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 98.2 bits (243), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 109/229 (47%), Gaps = 19/229 (8%) Query: 32 FAERVYETLFHAIVEGRIAVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVESLRGS 91 ++ V L I G GSKLP+E LA F VSR VVR+A+ RL+ + +VE +GS Sbjct: 10 LSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGS 69 Query: 92 GTYVKEKAGLAPANPEGEPETRIGHIMNGLELRLVLEPECAYMAALRRNRHDLDQMARLL 151 G +V E+AG+ P + + ++ +ELR +E E A AA RR+ DL + L Sbjct: 70 GVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEAAL 129 Query: 152 EGFEEANRVGGIAHHYDYGFHEAIALATGNLRFVQVMKTLEYDVSHAVNMLRHLMHIPPW 211 GG D FH A+A AT N F+ KTLE+ + ++L Sbjct: 130 AQIGVDVAAGGDGVAADVAFHRALAQATRNPYFI---KTLEF-------LSQYLEAATAV 179 Query: 212 TRSQDA---------MDEHRQIFDLIRVQDAEGARRAMRGHIENARTRM 251 TR +A +EH I + IR D AR A + H+ NA R+ Sbjct: 180 TRGNEARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRL 228 >gi|300313885|ref|YP_003777977.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 91.7 bits (226), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 102/221 (46%), Gaps = 4/221 (1%) Query: 33 AERVYETLFHAIVEGRIAVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVESLRGSG 92 +E + + AI+ G + KLP+E +LA +E SR VR+AL RLR + +V S RGSG Sbjct: 20 SEHICRQIIAAILRGELGENRKLPTEVELAQRYEASRTTVREALSRLRSEGIVVSRRGSG 79 Query: 93 TYVKEKAGLAPANPEGEPE-TRIGHIMNGLELRLVLEPECAYMAALRRNRHDLDQMARLL 151 YV+ L + +G P+ I + R +E A +AA R D+ M L Sbjct: 80 NYVQR---LPTLSSQGSPQIASIHDVERYYAFRECVEVGAAGIAATARQDEDVQAMRIAL 136 Query: 152 EGFEEANRVGGIAHHYDYGFHEAIALATGNLRFVQVMKTLEYDVSHAVNMLRHLMHIPPW 211 + + A G D H AIA AT N F+ ++ + + + ++L Sbjct: 137 QALQRAQLEGQTGVDEDLALHMAIARATRNPFFISTIEHALGPIRQCMELAQNLGSPQDG 196 Query: 212 TRSQDAMDEHRQIFDLIRVQDAEGARRAMRGHIENARTRMF 252 R Q DEH+ I I A AMR HI +AR R+F Sbjct: 197 ERIQTIDDEHQAIIQAIAEGSPARAEAAMRAHIGHARLRIF 237 >gi|300312626|ref|YP_003776718.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 256 Score = 82.0 bits (201), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 113/232 (48%), Gaps = 21/232 (9%) Query: 27 VRPERFAERVYETLFHAIVEGRIAVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVE 86 + P+R ++ + L IVEG AVGS+LPSE DLA VSRP +R+AL L + +E Sbjct: 6 IEPQRLYRQISDQLRKLIVEGEFAVGSRLPSERDLALQLGVSRPSLREALIALEVEGHIE 65 Query: 87 SLRGSGTYVKEKAGLAPANPEGEPETRI--GHIMNGLEL---RLVLEPECAYMAALRRNR 141 GSG YV P + E RI LEL R ++E E AY AA ++ Sbjct: 66 VRMGSGIYV---------CPPVQRERRIDLSSEEGPLELIRAREMIEGEVAYAAAQHGSK 116 Query: 142 HDLDQMARLLEGFEE--ANRVGGI-AHHYDYGFHEAIALATGNLRFVQVMKTLEYDVSHA 198 Q+A + E + +N GI D FH +A ATGN V ++ L +D Sbjct: 117 Q---QIAAVEEAYALMISNAQAGIDPLEADRLFHIRLAEATGNSVLVGLVTQL-FDARLG 172 Query: 199 VNMLRHLMHIPPWTRSQDAMDEHRQIFDLIRVQDAEGARRAMRGHIENARTR 250 R H Q+A+DEH + + +R ++ E AR AMR H++ A TR Sbjct: 173 PLFKRLHSHFDGTRVWQEAIDEHALVMEALRQRNPEQARAAMRRHMDIAFTR 224 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 830,971 Number of extensions: 34754 Number of successful extensions: 158 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 140 Number of HSP's successfully gapped: 12 Length of query: 258 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 175 Effective length of database: 1,226,865 Effective search space: 214701375 Effective search space used: 214701375 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)