BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2103.p
         (263 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311323|ref|YP_003775415.1| beta-1,4-galactosyltransferase ...    72   5e-14

>gi|300311323|ref|YP_003775415.1| beta-1,4-galactosyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 295

 Score = 72.0 bits (175), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 98/206 (47%), Gaps = 15/206 (7%)

Query: 8   LFSIIVTTHRRPAILERALRSLLAQSFVDYEIVLVADEGSIPTKEVASRLL-REKDVFLC 66
           L +I V T  R  +L RAL S+LAQS+   E+++V+D  +  T +  ++L  +  D+ + 
Sbjct: 4   LVTIYVPTKNRLGLLTRALNSVLAQSYRPLELIVVSDGATDGTCDYVNQLRGQHSDIQVK 63

Query: 67  L---PGAKGPAESRNAGVQLARGRFILFLDDDDSYRPDFLQAIVQCNRFLSDAVNYVSYT 123
           L     ++G   +RN  +Q A GRFI  +DDDD + PD ++  V+    L +     S  
Sbjct: 64  LIHNEQSQGACAARNLAIQAATGRFITGIDDDDVFMPDRIERFVRQWHALEEKGESFSCL 123

Query: 124 QLKEVRTPEGTHVLSSTEVDTGATDIRTLLVSNFIPNNAIILSSSIAKRHLVDATLQSHE 183
             + +    G+ +L   +      D+  +L +N I N        + +  + DA + + +
Sbjct: 124 FDRRIVNAGGSVMLWDLDA---RVDLPAILETNAIGNQVFTTPERLVEIGMFDAAMPAWQ 180

Query: 184 DWDYLISLVLKYEFNFLGISGPVVHI 209
           DW+  + LV  +        GP V I
Sbjct: 181 DWETWVRLVRTF--------GPAVSI 198


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 755,265
Number of extensions: 29007
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 180
Effective length of database: 1,226,865
Effective search space: 220835700
Effective search space used: 220835700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)