BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2099.p (252 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311565|ref|YP_003775657.1| branched-chain amino acid ABC t... 433 e-123 gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa... 206 2e-54 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 160 1e-40 gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC t... 155 3e-39 gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC t... 152 3e-38 >gi|300311565|ref|YP_003775657.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 252 Score = 433 bits (1114), Expect = e-123, Method: Compositional matrix adjust. Identities = 219/252 (86%), Positives = 231/252 (91%) Query: 1 MSTAYALELHGLHKAFERSQILCGVDLQLQAGERCALIGPNGAGKSSLFNLVSGRYRADA 60 M A AL L GLHKAF+ S IL GVDL+L+AGERCALIGPNGAGKSSLF+LVSGRYRADA Sbjct: 1 MIAAVALSLQGLHKAFDGSPILRGVDLELRAGERCALIGPNGAGKSSLFHLVSGRYRADA 60 Query: 61 GRVLLHGRDITRDSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRI 120 GR+ LHG DITR SPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRR+ Sbjct: 61 GRITLHGVDITRQSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRM 120 Query: 121 SQLRDANARAHAVLDKVGLAARAEVAAGELSYAEQRALELAVTIAADASVILLDEPTAGM 180 +A+ARA VL +VGLAARA+VAAGELSYAEQRALELAVTIAADASVILLDEPTAGM Sbjct: 121 GGSHEASARALTVLQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGM 180 Query: 181 SRAESAAMVALIREVTVGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDSAQRIRANPQ 240 SRAESAAMVALIREVT+GKTLLMVEHDMQVVFDLADRIAVMDNGRVIACD+A RIRAN Sbjct: 181 SRAESAAMVALIREVTMGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPRIRANED 240 Query: 241 VQALYLDRRRHG 252 VQALYLDRRRHG Sbjct: 241 VQALYLDRRRHG 252 >gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 206 bits (524), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 102/244 (41%), Positives = 153/244 (62%) Query: 3 TAYALELHGLHKAFERSQILCGVDLQLQAGERCALIGPNGAGKSSLFNLVSGRYRADAGR 62 T LE L K F+ + V+LQ++ G ALIGPNGAGK++ FNL++ +G+ Sbjct: 2 TDVILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQ 61 Query: 63 VLLHGRDITRDSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRISQ 122 +L +GRDIT D+P QI R G+ RSFQI+++FP +S ENVR L LG + FW+ Sbjct: 62 ILFNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGES 121 Query: 123 LRDANARAHAVLDKVGLAARAEVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSR 182 L+ + RA +L++V L + A +L Y +RALE+A T+A + ++LLDEPT GM Sbjct: 122 LKQLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMGH 181 Query: 183 AESAAMVALIREVTVGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDSAQRIRANPQVQ 242 + + ALI++V+ G+T+LMVEH+M V+ + DRI+V+ G ++A S + + NPQV Sbjct: 182 EDVDRVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQVM 241 Query: 243 ALYL 246 Y+ Sbjct: 242 EAYM 245 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 160 bits (404), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 93/248 (37%), Positives = 142/248 (57%), Gaps = 6/248 (2%) Query: 7 LELHGLHKAFERSQILCGVDLQLQAGERCALIGPNGAGKSSLFNLVSGRYRADAGRVLLH 66 L+L+ + K F Q+L GV+ ++ GE LIGPNGAGK+++FNL++G RA +G + + Sbjct: 3 LQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRFN 62 Query: 67 GRDITRDSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYA-FWRRISQLRD 125 DI +P +I G+AR+FQ +F ++ ENV + L Y A + R+ Sbjct: 63 DDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFRN 122 Query: 126 ANA----RAHAVLDKVGLAARAEVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMS 181 A RA +L V L +A + A LSY EQR LE A +A ++LLDEP AGM+ Sbjct: 123 AEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGMN 182 Query: 182 RAESAAMVALIREVTV-GKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDSAQRIRANPQ 240 AE +++ I + G T+ M+EHDM+ V L +RIAV++ G++IA + +I+ N + Sbjct: 183 PAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQE 242 Query: 241 VQALYLDR 248 V YL + Sbjct: 243 VIEAYLGK 250 >gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 155 bits (392), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 93/242 (38%), Positives = 146/242 (60%), Gaps = 4/242 (1%) Query: 7 LELHGLHKAFERSQILCGVDLQLQAGERCALIGPNGAGKSSLFNLVSGRYRADAGRVLLH 66 L++ L K+F L + L AG+ ALIGPNGAGKS+ FNL++G+ R D G VLL Sbjct: 4 LQVQQLSKSFGGVAALEELSFALPAGQMLALIGPNGAGKSTCFNLINGQLRPDRGEVLLD 63 Query: 67 GRDITRDSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRISQLRDA 126 G+ IT ++I R G+ R+FQ+++ F ++ ++V+ ALL + WR L Sbjct: 64 GQSITGLDARRIWRRGVGRTFQVSAAFSSMTVLQSVQAALLSHHRRLWQLWRPADSL--F 121 Query: 127 NARAHAVLDKVGLAARAEVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSRAESA 186 +A +LD+VG+AA+A+ A L+Y + + +ELA+ ++ ++L+DEPTAGM+ E Sbjct: 122 RQQAMELLDQVGMAAQAQRACAVLAYGDIKRVELAMALSNAPRLLLMDEPTAGMATQERQ 181 Query: 187 AMVALIREVTV--GKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDSAQRIRANPQVQAL 244 A++AL R + G +L EH M VVF ADRI V+ G+++A + +RA+ +V+ L Sbjct: 182 ALMALTRRLVNERGIAVLFTEHSMDVVFAHADRILVLARGQLVADGAPAVVRADARVREL 241 Query: 245 YL 246 Y Sbjct: 242 YF 243 >gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 152 bits (384), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 134/245 (54%) Query: 7 LELHGLHKAFERSQILCGVDLQLQAGERCALIGPNGAGKSSLFNLVSGRYRADAGRVLLH 66 L GL K + + L G R ALIGPNGAGK++ NL++G + +GRV Sbjct: 12 LRTEGLSKRWGSFVANSDISLTFAPGARHALIGPNGAGKTTFINLLTGGFAPSSGRVWFG 71 Query: 67 GRDITRDSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRISQLRDA 126 G DIT + G+ R+FQI +LF L+ E+V A+ G +Y +++ ++ + Sbjct: 72 GEDITALPQHARVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYKWYQTVASQTEV 131 Query: 127 NARAHAVLDKVGLAARAEVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSRAESA 186 A A+L + LA A L+Y +QR +E+A+ +A V+LLDEP AG+ AES Sbjct: 132 VDEAMALLASLKLAQEANSLTRNLAYGKQRLVEIALALATQPKVLLLDEPAAGIPSAESR 191 Query: 187 AMVALIREVTVGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDSAQRIRANPQVQALYL 246 + +I ++ T++ +EHDM +VF A+RI V+ G+V+ + I A+P+V+ +YL Sbjct: 192 ELFEVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAADPRVKEVYL 251 Query: 247 DRRRH 251 H Sbjct: 252 GEAEH 256 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 744,757 Number of extensions: 30066 Number of successful extensions: 600 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 357 Number of HSP's successfully gapped: 140 Length of query: 252 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 169 Effective length of database: 1,226,865 Effective search space: 207340185 Effective search space used: 207340185 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)