BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2096.p
         (499 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311562|ref|YP_003775654.1| hypothetical protein Hsero_2247...   887   0.0  

>gi|300311562|ref|YP_003775654.1| hypothetical protein Hsero_2247
           [Herbaspirillum seropedicae SmR1]
          Length = 495

 Score =  887 bits (2293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/482 (89%), Positives = 451/482 (93%)

Query: 18  FGNRFADLPPAFYTRLQPTPLPAPYLVGFSDAAAASVGLARPAEEDRSFLDIFAGNQIAP 77
           FGNRFA+LPPAF+TRLQPTPLPAPYLVGFS+ AAAS+ L RP  +D  FLDIFAGN+IAP
Sbjct: 14  FGNRFAELPPAFHTRLQPTPLPAPYLVGFSEDAAASIALPRPQADDGDFLDIFAGNRIAP 73

Query: 78  GSMPLSAVYSGHQFGVWAGQLGDGRAITLGDLAATDGQGRIELQLKGAGLTPYSRMGDGR 137
           GS PLSAVYSGHQFGVWAGQLGDGRAITLGDL A DG GRIELQLKGAG TPYSRMGDGR
Sbjct: 74  GSTPLSAVYSGHQFGVWAGQLGDGRAITLGDLPAADGAGRIELQLKGAGPTPYSRMGDGR 133

Query: 138 AVLRSSIREFLCSEAMAALGIPTTRALTVIGSDQRVLRESAETAAVVTRMAPSFIRFGSF 197
           AVLRSSIREFLCSEAMAALGIPTTRALTVIGSDQRVLRE+AETAAVVTRMAPSFIRFGSF
Sbjct: 134 AVLRSSIREFLCSEAMAALGIPTTRALTVIGSDQRVLRETAETAAVVTRMAPSFIRFGSF 193

Query: 198 EHWYYNQRFDELKVLGDTVLEQFYPALLQEDNPYQALLQEVTRRTATLMAQWQAVGFMHG 257
           EHWYYNQRFD+LK+L DTVLEQFYP LLQ  NPY ALL+EVTRRTATLMAQWQAVGFMHG
Sbjct: 194 EHWYYNQRFDDLKLLADTVLEQFYPELLQAGNPYAALLKEVTRRTATLMAQWQAVGFMHG 253

Query: 258 VMNTDNMSILGLTLDYGPFGFMEAFDARHICNHTDGQGRYSYQMQPRIGQWNCFALGQAM 317
           VMNTDNMSILGLTLDYGPFGFMEAFDARHICNHTD QGRYSYQMQPRIGQWNCFALGQAM
Sbjct: 254 VMNTDNMSILGLTLDYGPFGFMEAFDARHICNHTDSQGRYSYQMQPRIGQWNCFALGQAM 313

Query: 318 LPLIGSVEQTEAALAGYEAVFQAQHDALLRAKLGLRTQQADDARLIEALFAILQANHVDF 377
           LPLIG+VE+TEAALA YEA+FQAQH+ALLRAKLGLRT+Q +D +LIEA+FAILQANHVDF
Sbjct: 314 LPLIGTVEETEAALADYEAIFQAQHEALLRAKLGLRTRQPEDEQLIEAMFAILQANHVDF 373

Query: 378 TLFFRRLGDLQISNTANDEALRDLILDRPAFDAWAAQYRARLRAEDSDDAARRLAMHQVN 437
           TLFFRRLGDLQI N A+DE LRDLILDRPAFDAWA QYRARLRAEDSDD ARRLAMH VN
Sbjct: 374 TLFFRRLGDLQIGNAAHDEGLRDLILDRPAFDAWATQYRARLRAEDSDDQARRLAMHAVN 433

Query: 438 PKYVLRNYLAQIAIERAQHKDFSEVARLQAILSRPFDEQPEFDQYADLPPDWASHLEVSC 497
           PKYVLRNYLAQ+AIERAQ KDFSEVARLQ+IL  PFDEQPE D+YADLPPDWASHLEVSC
Sbjct: 434 PKYVLRNYLAQVAIERAQQKDFSEVARLQSILRHPFDEQPEHDKYADLPPDWASHLEVSC 493

Query: 498 SS 499
           SS
Sbjct: 494 SS 495


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,652,938
Number of extensions: 73012
Number of successful extensions: 205
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 410
Effective length of database: 1,198,455
Effective search space: 491366550
Effective search space used: 491366550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)