BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2092.p
         (258 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans isome...   511   e-146
gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans isome...    89   5e-19
gi|300310041|ref|YP_003774133.1| parvulin-like peptidyl-prolyl c...    66   3e-12

>gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score =  511 bits (1316), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 253/258 (98%), Positives = 256/258 (99%)

Query: 1   MTFKPARLLVLLFAIASVPAFAQNLAVVNGKAIPSSRADLMVKQMTAQGQPDSPQLRSAI 60
           MTFKPARLLVLLFAIAS+PAFAQNLAVVNGKAIPSSRA+LMVKQMTAQGQPDSPQLR AI
Sbjct: 1   MTFKPARLLVLLFAIASIPAFAQNLAVVNGKAIPSSRAELMVKQMTAQGQPDSPQLRGAI 60

Query: 61  KEELINREILMQEADKQGLANSTDVKNQLELARQSIVIRALIADYLKKNPVSDADIKAEY 120
           KEELINREILMQEADKQGLANSTDVKNQLELARQSIVIRALIADYLKKNPVSDADIKAEY
Sbjct: 61  KEELINREILMQEADKQGLANSTDVKNQLELARQSIVIRALIADYLKKNPVSDADIKAEY 120

Query: 121 DKFKAQAGDKEYHARHILVDKKEDAEAIIAKLKAGTKFEDLAKQSKDTGSAANGGDLDWA 180
           DKFKAQAGDKEYHARHILVDKKEDAEAIIAKLKAGTKFEDLAKQSKDTGSAANGGDLDWA
Sbjct: 121 DKFKAQAGDKEYHARHILVDKKEDAEAIIAKLKAGTKFEDLAKQSKDTGSAANGGDLDWA 180

Query: 181 TPASFVKPFSDAMVALKKGEITQTPVQTQFGWHVIKLEDVRPAKVPTLDEVKPQIAEALQ 240
           TPASFVKPFSDAMVALKKGE+T TPVQTQFGWHVIKLEDVRPAKVPTLDEVKPQIAEALQ
Sbjct: 181 TPASFVKPFSDAMVALKKGEVTPTPVQTQFGWHVIKLEDVRPAKVPTLDEVKPQIAEALQ 240

Query: 241 QKKLQAYQEQLRAKAKVQ 258
           QKKLQAYQEQLRAKAKVQ
Sbjct: 241 QKKLQAYQEQLRAKAKVQ 258


>gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans
           isomerase D [Herbaspirillum seropedicae SmR1]
          Length = 639

 Score = 88.6 bits (218), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 89/146 (60%), Gaps = 16/146 (10%)

Query: 112 SDADIKAEYDKFKA-QAGDKEYHARHILVDKKEDA------------EAIIAKLKAG-TK 157
           +D DIKA Y++ K   A +++  A HIL+  K+DA            E ++A+L+    +
Sbjct: 247 TDDDIKAYYEQNKKLYATEEQRRASHILIAVKKDASAADQAAAKSKAEGLVAQLRKNPGE 306

Query: 158 FEDLAK-QSKDTGSAANGGDLDWATPASFVKPFSDAMVALKKGEITQTPVQTQFGWHVIK 216
           F  LAK  S+D GSA NGGDL +    + VKPF DA  +LK+GEI+  PVQ+ FG+H+I+
Sbjct: 307 FAKLAKANSQDPGSAENGGDLGYFGKGAMVKPFEDAAFSLKQGEISD-PVQSDFGYHIIE 365

Query: 217 LEDVRPAKVPTLDEVKPQIAEALQQK 242
           +  ++PA V  L+ VK +I   ++++
Sbjct: 366 VTGIKPAAVKPLESVKAEIGSEIKKQ 391


>gi|300310041|ref|YP_003774133.1| parvulin-like peptidyl-prolyl
           cis-trans isomerase [Herbaspirillum seropedicae SmR1]
          Length = 496

 Score = 66.2 bits (160), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 11/95 (11%)

Query: 133 HARHILVDKKEDAEAIIAKLK----------AGTKFEDLAKQSKDTGSAANGGDLDWATP 182
           H RHIL+   +   A  AK K              FE+LAK   +  SA+ GGDL W  P
Sbjct: 354 HVRHILIKVNQVVTAAEAKRKLTELKERLDHGSATFEELAKLYSNDLSASKGGDLGWVYP 413

Query: 183 ASFVKPFSDAMVALKKGEITQTPVQTQFGWHVIKL 217
              V  F  AM  LK GE++Q P++T FG+H+I++
Sbjct: 414 GDTVPEFERAMDQLKPGEVSQ-PIETPFGYHLIQV 447


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 730,572
Number of extensions: 28636
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 4
Length of query: 258
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,226,865
Effective search space: 214701375
Effective search space used: 214701375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)