BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2090.p (1340 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311556|ref|YP_003775648.1| phosphoribosylformylglycinamidi... 2700 0.0 >gi|300311556|ref|YP_003775648.1| phosphoribosylformylglycinamidine synthase [Herbaspirillum seropedicae SmR1] Length = 1341 Score = 2700 bits (6999), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1303/1341 (97%), Positives = 1322/1341 (98%), Gaps = 1/1341 (0%) Query: 1 MLILPGSNALSAFRTQRLLTQLQAVDAAITGVSGRYLHFVDA-KALTQEDEARLNGLLTY 59 MLILPGSNALSAFRTQRLLTQLQAVDAAITGVSGRYLHFVDA +ALTQEDEARLNGLLTY Sbjct: 1 MLILPGSNALSAFRTQRLLTQLQAVDAAITGVSGRYLHFVDAAQALTQEDEARLNGLLTY 60 Query: 60 GDPFNGSDEGDAFVVIPRFGTISPWASKATDIVRNCGMGHIHRVERGIIFRVQVKTGLLG 119 GDPFNGSD+G+ FVVIPR GTISPWASKATDIVRNCGM HIHRVERGIIFRVQVKTGLLG Sbjct: 61 GDPFNGSDDGETFVVIPRLGTISPWASKATDIVRNCGMAHIHRVERGIIFRVQVKTGLLG 120 Query: 120 GTKKLNEASLPAVAALLHDRMTETVLREPQDAAALFSELQAKPLESVDVIGGGRAALERA 179 G KKLNEASLP VAALLHDRMTETVLR+PQ A+ALFSELQAKPLESVDV+GG RAALERA Sbjct: 121 GAKKLNEASLPGVAALLHDRMTETVLRDPQQASALFSELQAKPLESVDVLGGSRAALERA 180 Query: 180 NTELGLALSDDEIDYLVEAFTKAQRNPTDVELMMFAQANSEHCRHKIFNADWTIDGEKQD 239 NTELGLALSDDEIDYLVEAFTKAQRNPTDVELMMFAQANSEHCRHKIFNADWTIDG+KQD Sbjct: 181 NTELGLALSDDEIDYLVEAFTKAQRNPTDVELMMFAQANSEHCRHKIFNADWTIDGQKQD 240 Query: 240 KSLFGMIKNTHQLAPKGTVVAYSDNSSIIEGATVSRFYQRGATKGNVYEASDELTHILMK 299 KSLFGMIKNTHQLAPKGTVVAYSDNSSIIEGATVSRFYQRGA KGNVYEAS+ELTHILMK Sbjct: 241 KSLFGMIKNTHQLAPKGTVVAYSDNSSIIEGATVSRFYQRGAIKGNVYEASEELTHILMK 300 Query: 300 VETHNHPTAISPFPGASTGAGGEIRDEGATGRGSKPKAGLTGFTVSNLMVTHAVQPWENA 359 VETHNHPTAISPFPGASTGAGGEIRDEGATGRGSKPKAGLTGFTVSNLMVTHAVQPWENA Sbjct: 301 VETHNHPTAISPFPGASTGAGGEIRDEGATGRGSKPKAGLTGFTVSNLMVTHAVQPWENA 360 Query: 360 RDVAQPVAERAEHAQGGIYGKPERIASPLQIMIDGPLGGAAFNNEFGRPNLGGYFRTYEQ 419 RDVAQPVAER HAQGGIYGKPERIASPLQIMIDGPLGGAAFNNEFGRPNLGGYFRTYEQ Sbjct: 361 RDVAQPVAERDAHAQGGIYGKPERIASPLQIMIDGPLGGAAFNNEFGRPNLGGYFRTYEQ 420 Query: 420 NVGGQVMGYHKPIMIAGGMGNISAKHTKKNDLPVGSLLIQLGGPGMRIGMGGGAASSMAT 479 NVGGQVMGYHKPIMIAGGMGNISAKHTKKNDLPVGSLLIQLGGPGMRIGMGGGAASSMAT Sbjct: 421 NVGGQVMGYHKPIMIAGGMGNISAKHTKKNDLPVGSLLIQLGGPGMRIGMGGGAASSMAT 480 Query: 480 GVNTADLDFDSVQRGNPEMERRAQEVINACWALGDENPIQSIHDVGAGGLSNAFPEITND 539 GVN ADLDFDSVQRGNPEMERRAQEVINACWALGD+NPIQSIHDVGAGGLSNAFPEITND Sbjct: 481 GVNAADLDFDSVQRGNPEMERRAQEVINACWALGDDNPIQSIHDVGAGGLSNAFPEITND 540 Query: 540 AKRGAIFDLRKVPLEESGLAPREIWSNESQERYVLAILPEHLPLFKYLCERERAPFAVVG 599 AKRGAIFDLRKVPLEESGLAPREIWSNESQERYVLAILPEHL LFKYLCERERAPFAVVG Sbjct: 541 AKRGAIFDLRKVPLEESGLAPREIWSNESQERYVLAILPEHLELFKYLCERERAPFAVVG 600 Query: 600 TATEERQLKVIDPEHNNSPVDMPMDVLLGKPPKMHRDVQHVEKQLPPVDLTGMDLVEVAQ 659 TATEERQLKVIDPEHNNSPVDMPMDVLLGKPPKMHRDV HVEKQLPPVDLTGMDLVEVAQ Sbjct: 601 TATEERQLKVIDPEHNNSPVDMPMDVLLGKPPKMHRDVTHVEKQLPPVDLTGMDLVEVAQ 660 Query: 660 RVLRLPAVADKSFLITIGDRSVGAMTVRDQMVGPWQVPVADVAVTAMGLEGYLGEAMAMG 719 RVLRLPAVADKSFLITIGDRSVGAMTVRDQMVGPWQVPVADVAVTAMGLEGY GEAMAMG Sbjct: 661 RVLRLPAVADKSFLITIGDRSVGAMTVRDQMVGPWQVPVADVAVTAMGLEGYRGEAMAMG 720 Query: 720 ERTPLAVIDAPASGRMAVGEAITNIAAAPIAEIGDIKLSANWMAACGQPGQDAALFDTVK 779 ERTPLAVIDAPASGRMAVGEAITNIAAAPIAEIGDIKLSANWMAACGQPGQDAALFDTVK Sbjct: 721 ERTPLAVIDAPASGRMAVGEAITNIAAAPIAEIGDIKLSANWMAACGQPGQDAALFDTVK 780 Query: 780 AVGMELCPALGISIPVGKDSLSMRSTWSDEEGAKSVTSPVSLIVSGFAPVTDVRRVLTPQ 839 AVGMELCPALG+SIPVGKDSLSMRSTWSDEEGAKSVTSPVSLIVSGFAPVTDVRRVLTPQ Sbjct: 781 AVGMELCPALGVSIPVGKDSLSMRSTWSDEEGAKSVTSPVSLIVSGFAPVTDVRRVLTPQ 840 Query: 840 LRKDKGETVLILIDLGRGKNRMGASALTQVMQQIGNETPDVDSAEDLKAFFNAIQQLNTE 899 LRKDKGETVLILIDLGRGKNR+GASALTQVMQQIGNETPDVDSA+DLKAFFNAIQQLNTE Sbjct: 841 LRKDKGETVLILIDLGRGKNRIGASALTQVMQQIGNETPDVDSADDLKAFFNAIQQLNTE 900 Query: 900 DRLLAYHDRSDGGLYATLAEMAFAGHTGISVNLDILTMEAEHAADWGDSKNWTTQVAERR 959 DRLLAYHDRSDGGLYATLAEMAFAGHTGISVNLDILTME EHAADWGDSKNWTTQVAERR Sbjct: 901 DRLLAYHDRSDGGLYATLAEMAFAGHTGISVNLDILTMEGEHAADWGDSKNWTTQVAERR 960 Query: 960 NELTLRALFSEELGAVIQVPAEQKSEVMNVLRTYNLGACSHIIGKPNDRDVIEFMRDAKN 1019 NELTLRALFSEELGAVIQVPAEQKS+VMNVLR+YNLGACSHIIGKPNDRDVIEFMRDAKN Sbjct: 961 NELTLRALFSEELGAVIQVPAEQKSDVMNVLRSYNLGACSHIIGKPNDRDVIEFMRDAKN 1020 Query: 1020 IYGQPRAELHRVWSETSWRIARLRDNPACADAEYERLLDAADPGMTPKLTFDPQEDIAAP 1079 IY QPRAELHRVWSETSWRIARLRDNPACADAEY+RLLDA DPGMTPKL+FDPQEDIAAP Sbjct: 1021 IYSQPRAELHRVWSETSWRIARLRDNPACADAEYDRLLDATDPGMTPKLSFDPQEDIAAP 1080 Query: 1080 YLSLGAAARPKVAILREQGVNSHIETAYAMHKAGFTAVDVHMSDLIANRAKLDDFKGFIA 1139 YLSLGAAARPKVAILREQGVNSHIETAYAMHKAGFTAVDVHMSDLIANRAKLDDFKGFIA Sbjct: 1081 YLSLGAAARPKVAILREQGVNSHIETAYAMHKAGFTAVDVHMSDLIANRAKLDDFKGFIA 1140 Query: 1140 VGGFSYGDVLGAGEGWAKTILFNAALAEQFSRFFQRQDTFSLGICNGCQMMSNLKSMIPG 1199 VGGFSYGDVLGAGEGWAKTILFNA LAEQFSRFFQRQDTFSLGICNGCQMMSNLKSMIPG Sbjct: 1141 VGGFSYGDVLGAGEGWAKTILFNAQLAEQFSRFFQRQDTFSLGICNGCQMMSNLKSMIPG 1200 Query: 1200 AQAWPKFTRNKSEQFEARFVMVEVADSPSIFMQGMAGTQAPIATAHGEGFADFSQTGDID 1259 A+AWPKFTRNKSEQFEARFVMVEVADSPSIFMQGMAGTQAPIATAHGEGFADFSQTGDID Sbjct: 1201 AEAWPKFTRNKSEQFEARFVMVEVADSPSIFMQGMAGTQAPIATAHGEGFADFSQTGDID 1260 Query: 1260 RAIIAMRYVDHRGAATEAYPFNPNGSPQGITSVTTPDGRFTVLMPHAERVFRTVTQSWHP 1319 +AI+AMRYVDHRGAATEAYPFNPNGSPQGITSVTTPDGRFTVLMPHAERVFRTVTQSWHP Sbjct: 1261 KAIVAMRYVDHRGAATEAYPFNPNGSPQGITSVTTPDGRFTVLMPHAERVFRTVTQSWHP 1320 Query: 1320 ESWGEDSPWMRMFRNARKWVG 1340 ESWGEDSPWMRMFRNARKWVG Sbjct: 1321 ESWGEDSPWMRMFRNARKWVG 1341 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 4,400,222 Number of extensions: 200401 Number of successful extensions: 579 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 575 Number of HSP's successfully gapped: 1 Length of query: 1340 Length of database: 1,619,870 Length adjustment: 97 Effective length of query: 1243 Effective length of database: 1,160,575 Effective search space: 1442594725 Effective search space used: 1442594725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 137 (57.4 bits)